ALMaSS: PoecilusCupreus_Population_Manager Class Reference

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#include <PoecilusCupreus_All.h>

Inheritance diagram for PoecilusCupreus_Population_Manager:

Public Member Functions
	PoecilusCupreus_Population_Manager (Landscape *a_l_ptr)
	Constructor. More...

	~PoecilusCupreus_Population_Manager () override=default
	Destructor: the same as in base class. More...

void	CreateObjects (int ob_type, TAnimal a_pvo_ptr, void null, Struct_Beetle *a_data, int a_number) override
	Method to add beetles to the population. More...

bool	OnFarmEvent (FarmToDo a_event, Beetle_Base *a_caller) override
	Method dealing with the farming mortalities. More...

bool	OnFarmEventPupae (FarmToDo event, Beetle_Base *a_caller) override
	Method dealing with the farming mortalities this differs for pupae. More...

void	CalculateDailyEggProduction (double a_temp) override
	Figure out the maximum number of eggs that can be laid today - must be overridden in descendent classes. More...

double	GetEggFormationProgress (int a_day) const
	Returns the current progress towards egg formation based on a given date to become reproductively active. More...

double	GetOvipositionPeriodProgress (int a_day) const
	Returns the current progress towards ending the oviposition period based on the first active day. More...

double	CalcDailyEggFormationProgress (double a_temp)
	Calculates the additional development for egg formation for today. More...

void	CalcDailyRandomEggFactor (double a_temp)
	Updates DailyRandomEggFactor. Should be called daily More...

void	CalcDormancyChance (double a_temp, int a_day)
	Updates probability of enterning dormancy. Should be called daily More...

void	CalcDormancyExitChance (double a_temp, int a_day)
	Updates probability of leaving dormancy. Should be called daily More...

bool	FertilizerMortality (FarmToDo a_event)
	The method that deals with the fertilizer mortality for the larvae. More...

void	SetPc_Treatment_Mortalities ()
	Hard-coded for now method to set fertilizer mortality chances. More...

double	GetDormancyChance () const
	Get the daily chance to enter dormancy. More...

double	GetDormancyExitChance () const
	Get the daily chance to exit dormancy. More...

void	DoLast () override
	Adds output adult locations to DoLast. More...

Public Member Functions inherited from Beetle_Population_Manager
	Beetle_Population_Manager (Landscape *a_l_ptr, int a_n)
	Beetle_Population_Manager Constructor. More...

	~Beetle_Population_Manager () override
	Beetle_Population_Manager Destructor. More...

void	DoFirst () override
	Does day degree development calculations here. More...

void	DoBefore () override
	Replaces the Step function for the Egg_List. More...

unsigned	Probe (int a_ListIndex, Probe_Data *a_TheProbe_ptr) override
	Overides the Population_Manager::Probe method. More...

int	SupplyEggPopSize () const
	Get egg population size. More...

int	SupplyDailyEggPopSize (const int day) const
	Get the number of eggs created on a given day. More...

void	SupplyEggLocXY (unsigned day, int j, int &x, int &y) const
	Get the location of an egg from a given day. More...

double	SupplyDevelConst1 (unsigned a_index) const

virtual double	SupplyDayDegs (const unsigned a_stage, const int a_day)
	Get the day degress experienced this year for a specific day created and instar/stage. More...

unsigned	GetPopulationSize (int) override
	Returns the population size of the lifestage type bobType. More...

void	OpenTheAOROutputProbe (const string &a_AORFilename) override
	Opens the AOR output file. More...

void	DoBeetleActiveProbe (int a_lifestage)
	Counts all active beetles and saves the results to a file. More...

void	SetStageProductionRecord (int a_value, int a_stage)
	Sets stage production record attribute. More...

int	GetStageProductionRecord (int a_stage) const
	Gets the stage production record attribute. More...

void	AddStageProductionRecord (int a_value, int a_stage)
	Adds to the stage production record attribute. More...

Public Member Functions inherited from Population_Manager
	Population_Manager (Landscape *a_l_ptr, int a_numberLifeStages=12)

virtual	~Population_Manager (void)

void	SetNoProbesAndSpeciesSpecificFunctions (int a_pn) override
	Sets up probe and species specifics. More...

unsigned	GetLiveArraySize (int a_listindex) override
	Gets the number of 'live' objects for a list index in the TheArray. More...

void	IncLiveArraySize (int a_listindex)
	Increments the number of 'live' objects for a list index in the TheArray. More...

unsigned int	FarmAnimalCensus (unsigned int a_farm, unsigned int a_typeofanimal)

char *	SpeciesSpecificReporting (int a_species, int a_time) override

char *	ProbeReport (int a_time)

char *	ProbeReportTimed (int a_time)

void	ImpactProbeReport (int a_Time)

bool	BeginningOfMonth ()

void	LOG (const char *fname)

int	SupplyStepSize () const

void	Run (int NoTSteps) override

virtual void	ImpactedProbe ()

virtual TAnimal *	SupplyAnimalPtr (unsigned int a_index, unsigned int a_animal)
	Returns the pointer indexed by a_index and a_animal. Note NO RANGE CHECK. More...

virtual unsigned	SupplyListIndexSize ()

unsigned	SupplyListSize (unsigned listindex) const

void	PushIndividual (const unsigned a_listindex, TAnimal *a_individual_ptr)

const char *	SupplyStateNames (int i) const

unsigned	SupplyStateNamesLength () const

virtual void	DisplayLocations ()

TAnimal *	FindIndividual (unsigned Type, TAnimal *a_me)

virtual TAnimal *	FindClosest (int x, int y, unsigned Type, TAnimal *a_me)

omp_nest_lock_t *	GetGuardMapElement (unsigned a_x_index, unsigned a_y_index)
	Return the guard map cell. More...

void	SetGuardMapElement (unsigned a_x_index, unsigned a_y_index)
	Set the given guard map cell. More...

void	UnsetGuardMapElement (unsigned a_x_index, unsigned a_y_index)
	Unset the given guard map cell. More...

void	UpdateGuardMap (int a_x, int a_y, int &a_index_x, int &a_index_y)
	Get the index of the guard map for the given location. More...

bool	OpenTheRipleysOutputProbe ()

bool	OpenTheMonthlyRipleysOutputProbe ()

bool	OpenTheReallyBigProbe ()

void	CloseTheMonthlyRipleysOutputProbe () const

virtual void	CloseTheRipleysOutputProbe ()

virtual void	CloseTheReallyBigOutputProbe ()

TTypesOfPopulation	GetPopulationType ()

int	GetSeasonNumber ()
	Get the season number. More...

void	LamdaDeath (int x, int y)

void	LamdaBirth (int x, int y)

void	LamdaBirth (int x, int y, int z)

void	LamdaClear ()

void	LamdaDumpOutput ()

virtual int	SupplyPegPosx (int)

virtual int	SupplyPegPosy (int)

virtual int	SupplyCovPosx (int)

virtual int	SupplyCovPosy (int)

virtual bool	OpenTheFledgelingProbe ()

virtual bool	OpenTheBreedingPairsProbe ()

virtual bool	OpenTheBreedingSuccessProbe ()

virtual void	BreedingPairsOutput (int)

virtual int	TheBreedingFemalesProbe (int)

virtual int	TheFledgelingProbe ()

virtual void	BreedingSuccessProbeOutput (double, int, int, int, int, int, int, int)

virtual int	TheBreedingSuccessProbe (int &, int &, int &, int &, int &, int &)

virtual void	FledgelingProbeOutput (int, int)

virtual void	TheGeneticProbe (unsigned, int, unsigned &)

virtual void	GeneticsResultsOutput (FILE *, unsigned)

void	Debug_Shuffle (unsigned int Type)

virtual void	RunStepMethods ()

Public Member Functions inherited from Population_Manager_Base
	Population_Manager_Base (Landscape *L)
	The Population_Manager_Base constructor. More...

virtual void	Catastrophe (int)
	Must be re-implemented in descendent classes. More...

int	SupplySimW () const
	Returns landscape width in m. More...

int	SupplySimH () const
	Returns landscape height in m. More...

int	SupplySimWH () const
	Returns half the landscape width in m. More...

int	SupplySimHH () const
	Returns half the landscape height in m. More...

virtual int	ProbeFileInput (char *p_Filename, int p_ProbeNo)
	A stub to build specfic probes and functions. More...

int	SupplyListNameLength () const

const char *	SupplyListName (int a_i) const
	Get a list name from the list. More...

virtual void	SupplyLocXY (unsigned, unsigned, int &, int &)
	A stub for identifying an individual at a location. More...

virtual TAnimal *	FindClosest (int, int, unsigned)
	A stub for identifying an individual at a location. More...

std::string	SupplySimulationName ()

void	SetStepCounterInADay (int a_counter)
	Set step counter in a day. More...

int	GetStepCounterInADay (void)
	Return the sep counter in a day. More...

virtual double	GetAphidDensity (int, int)
	Return the aphid density, it is only used when aphid simulations are running. More...

Static Public Member Functions
static double	CalcOvipositionLength (double a_temp)
	Uses day degrees to determine when the oviposition period is over. More...

Public Attributes
TTreatmentvsMortalityList	m_Pc_Treatment_Mortalities
	The list that summarises farming events that involve fertilizer applications and the mortalities they cause. More...

Public Attributes inherited from Beetle_Population_Manager
long	m_EPopSize {0}
	To store the current population size. More...

std::unique_ptr< MovementMap >	m_MoveMap
	Map of suitability for movement. More...

std::unique_ptr< std::vector< std::unique_ptr< Beetle_Egg_List > > >	m_EList {nullptr}
	Replacement for TheArray[0]. More...

Public Attributes inherited from Population_Manager
bool	ProbesSet {}

Public Attributes inherited from Population_Manager_Base
Probe_Data *	TheProbe [100] = {nullptr}
	Holds a list of pointers to standard output probes. More...

Protected Member Functions
void	DayDegreeCalculations (int a_dayinyear, bool a_usehourly) override
	Does day degree development calculations here. More...

Protected Member Functions inherited from Beetle_Population_Manager
void	Catastrophe () override
	Method to arbitrarily alter populations size. More...

void	Catastrophe2 ()
	Method to arbitrarily alter populations size restricted spatially. More...

void	TheRipleysOutputProbe (ofstream *a_prb) override
	Special output functionality. More...

void	TheReallyBigOutputProbe () override
	Special output functionality. More...

void	TheAOROutputProbe () override
	Special output functionality. More...

bool	IsStartHabitat (int a_x, int a_y) const
	Used to specify legal starting habitats for simulation start-up. More...

bool	IsStartHabitatAux (TTypesOfLandscapeElement tole) const
	Used to specify legal starting habitats for simulation start-up. More...

virtual void	DoExtremeTempActions (double a_airtemp)
	Species specific actions to cope with response to extreme temperature, if needed. More...

virtual void	DoEggDailyMortalityActions (double a_atemptoday)
	Species specific actions to cope with temperature related egg mortality. More...

virtual void	DoLarvalDailyMortalityActions (double a_atemptoday)
	Species specific actions to cope with temperature related laval mortality. More...

void	SetAdultEggLayingThreshold (const double a_value)
	Set the temperature threshold for egg laying. More...

void	incInField ()
	Increments in field counter. More...

void	incInCrop ()
	Increments in crop counter. More...

void	incOffField ()
	Increments off field counter. More...

void	PestMortLocOutput ()
	Annual pesticide mortality locations output. More...

Protected Member Functions inherited from Population_Manager
virtual bool	StepFinished ()
	Methods to run the simulations. More...

virtual void	DoAfter ()

virtual void	DoSpecialBetweenLifeStages (int a_life_stage)

virtual void	SortX (unsigned Type)

void	SortXIndex (unsigned Type)

virtual void	SortY (unsigned Type)

void	SortState (unsigned Type)

void	SortStateR (unsigned Type)

virtual unsigned	PartitionLiveDead (unsigned Type)

virtual void	Shuffle_or_Sort (unsigned Type)

virtual void	Shuffle (unsigned Type)

Protected Member Functions inherited from Population_Manager_Base
	~Population_Manager_Base ()=default

Static Protected Member Functions
static void	SetMeanDistance (double a_temp)
	Determines the base distance moved today. More...

Static Protected Member Functions inherited from Beetle_Population_Manager
static void	PestMortLocOutputOpen ()
	Annual pesticide mortality output file open. More...

static void	PestMortLocOutputError ()
	Pesticide mortality output error handling. More...

Protected Attributes
double	m_CurrentEggFormationProgress {0.0}

double	m_DailyEggVariance {0.0}
	Used to store the daily variance in egg production. More...

double	m_DormancyChance {0.0}
	Used to store the daily chance to enter dormancy. More...

double	m_DormancyExitChance {0.0}
	Used to store the daily chance to exit dormancy. More...

std::array< double, 365 >	m_EggFormationProgress {}
	Storage for daily eggformation progress. More...

std::array< double, 365 >	m_OvipostitionlengthProgress {}
	Storage for daily oviposition period progress. More...

double	m_Dormancy_threshold {5.0}
	Threshold temeperature. eac h day below that temperature increases hibernation chances. More...

double	m_Dormancy_multiplier {1.2}
	The multiplier to apply if below the threshold dormancy_threshold. More...

double	m_Dormancy_exit_threshold {8.0}
	Threshold for dormancy exit temperature. each day above that temperature increases hibernation exit chances. More...

double	m_Dormancy_exit_multiplier {1.2}
	The multiplier to apply if above the threshold dormancy_exit_threshold. More...

double	m_PoecilusDailyEggFactorA {0.0}
	Parameter a used to calculate the number of eggs laid per day. More...

double	m_PoecilusDailyEggFactorB {0.0}
	Parameter b used to calculate the number of eggs laid per day. More...

double	m_PoecilusDailyEggFactorC {0.0}
	Parameter c used to calculate the number of eggs laid per day. More...

double	m_PoecilusDailyVarianceEggFactorA {0.0}
	Parameter a used to calculate variance in the number of eggs laid per day. More...

double	m_PoecilusDailyVarianceEggFactorB {0.0}
	Parameter b used to calculate variance in the number of eggs laid per day. More...

double	m_PoecilusDailyVarianceEggFactorC {0.0}
	Parameter c used to calculate variance in the number of eggs laid per day. More...

int	m_PoecilusDormancyStartDateEarly {}
	Earliest day in the year for entering dormancy. More...

int	m_PoecilusDormancyStartDate {}
	Typical day in the year for entering dormancy. More...

int	m_PoecilusDormancyExitDateEarly {}
	Earliest day in the year for leaving dormancy. More...

int	m_PoecilusDormancyExitDate {}
	Latest day in the year for leaving dormancy. More...

double	m_PoecilusStandardDormancyChance {}
	Base chance per day of entering dormancy. More...

double	m_PoecilusStandardDormancyExitChance {}
	Base chance per day of leaving dormancy. More...

double	m_PreOviRate
	Rate of change with temperature for preovipostion development (calculated from other configs) More...

Protected Attributes inherited from Beetle_Population_Manager
double	m_MortalityTempStep {5.0}
	Threshold temperatures for mortalities: Step size. More...

double	m_MortalityTempMin {0.0}
	hreshold temperatures for mortalities: Min More...

double	m_MortalityTempMax {25.0}
	Threshold temperatures for mortalities: Max. More...

int	m_TemperatureCategory { 0 }
	Storage for the temperature category today. More...

int	m_NoTemperatureCategories { 0 }
	Storage for the number of temperature categories used. More...

vector< std::array< double, 365 > >	m_DayDegs {}
	Storage for daily day degrees for non-adult stages. More...

TToleList	m_BeetleStartHabitats
	the list of the toles that the beetles are assigned to in the beginning of the simulation More...

tBeetleToleTovs	m_BeetleToleTovs
	The list of start habitats for the beetle. More...

int	m_BeetleLarvalStagesNum { 3 }

vector< int >	m_StageProductionProduction { 0 }
	Testing/Output attribute holding the number of larvae produced today. More...

double	m_AdultEggLayingThreshold {}
	Temperature threshold for egg laying. More...

double	m_EggProductionSlope {}
	the slope of the linear function that defines todays egg production More...

vector< double >	m_DevelConst1 {}
	Day degree threshold constant for eggs to pupae. More...

vector< double >	m_DevelopmentInflectionPoints {}
	Inflection point in day degree calculations for non-adult stages. More...

vector< double >	m_AboveInflectionRates {}
	Day degree constant above inflection point for all non-adult stages. More...

vector< SimplePositionMapInt * >	m_BeetlePositionMaps [bob_foobar] {}

int	m_InFieldNo {}
	In-field counter. More...

int	m_InCropNo {}
	In-crop counter. More...

int	m_OffFieldNo {}
	Off-field counter. More...

TTypesOfVegetation	m_InCropRef {}
	In crop tole reference. More...

Protected Attributes inherited from Population_Manager
vector< unsigned >	m_LiveArraySize

int	m_NoProbes = 0

std::vector< std::vector< omp_nest_lock_t * > >	m_MapGuard
	This is used to make sure animals will not behaviour at the same area - multi threads. More...

int	m_guard_cell_height_num

int	m_guard_cell_width_num

int	m_guard_cell_size

bool	m_is_paralleled
	This is used to indicate whether the species is paralleled. More...

const char *	StateNames [100] {}

int	m_StepSize {}

vector< vector< forward_list< TAnimal * > * > >	TheSubArrays
	Hold all the animal pointers. More...

vector< vector< int > >	TheSubArraysSizes
	Hold all the animal sizes in each thread. More...

vector< int >	m_LifeStageOrderVec
	The vector to store the life stage order for looping specie life stages. More...

vector< forward_list< TAnimal * >::iterator >	TheSubArraysIterators
	the iterator from last time called for SupplyAnimalPtr(), this for fast loop all the animals in the derived class. More...

vector< int >	TheSubArrayPreviousIndex
	the animal index number from last time called for SupplyAnimalPtr(), this for fast loop all the animals in the derived class. More...

vector< int >	TheSubArrayThreadIndex
	the thread index number from last time called for SupplyAnimalPtr(), this for fast loop all the animals in the derived class. More...

unsigned	StateNamesLength

FILE *	TestFile {}

FILE *	TestFile2 {}

vector< unsigned >	BeforeStepActions
	Holds the season list of possible before step actions. More...

int	m_SeasonNumber
	Holds the season number. Used when running goose and hunter sims. More...

TTypesOfPopulation	m_population_type {TOP_NoSpecies}

ofstream *	AOROutputPrb {}

ofstream *	RipleysOutputPrb {}

ofstream *	RipleysOutputPrb1 {}

ofstream *	RipleysOutputPrb2 {}

ofstream *	RipleysOutputPrb3 {}

ofstream *	RipleysOutputPrb4 {}

ofstream *	RipleysOutputPrb5 {}

ofstream *	RipleysOutputPrb6 {}

ofstream *	RipleysOutputPrb7 {}

ofstream *	RipleysOutputPrb8 {}

ofstream *	RipleysOutputPrb9 {}

ofstream *	RipleysOutputPrb10 {}

ofstream *	RipleysOutputPrb11 {}

ofstream *	RipleysOutputPrb12 {}

ofstream *	ReallyBigOutputPrb {}

AOR_Probe *	m_AOR_Probe {}
	A pointer to the AOR probe. More...

long int	lamdagrid [2][257][257] {}

Protected Attributes inherited from Population_Manager_Base
int	SimH
	stores the simulation height More...

int	SimW
	stores the simulation width More...

int	SimHH
	stores the simulation height halved More...

int	SimWH
	stores the simulation width halved More...

string	m_SimulationName
	stores the simulation name More...

Landscape *	m_TheLandscape
	holds an internal pointer to the landscape More...

int	m_ListNameLength {}
	the number of life-stages simulated in the population manager More...

const char *	m_ListNames [32] {}
	A list of life-stage names. More...

std::string	m_AORProbeFileName {"AOR_Probe.txt"}
	name of the AOR Probe file More...

std::string	m_ProbeFileName {"Probe.res"}
	name of the Probe file More...

int	m_step_counter_in_a_day
	Step counter in a day, this is used for the animals with finer step size other than one day. More...

Constructor & Destructor Documentation

◆ PoecilusCupreus_Population_Manager()

PoecilusCupreus_Population_Manager::PoecilusCupreus_Population_Manager ( Landscape * a_l_ptr )

Constructor.

                                                                                         : Beetle_Population_Manager(
     a_l_ptr, bob_foobar) {
     m_SimulationName = "PoecilusCupreus";
     m_population_type = TOP_PoecilusCupreus;
     m_DayDegs.resize(m_BeetleLarvalStagesNum + 2); // Resets the values to zero (+2 = eggs & pupae)
  
     // - - - - - - - - - - Start assignments used for parameter input - - - - - - - - - -
     SetPc_Treatment_Mortalities();
     m_PoecilusDailyEggFactorA = cfg_PoecilusDailyEggFactorA.value();
     m_PoecilusDailyEggFactorB = cfg_PoecilusDailyEggFactorB.value();
     m_PoecilusDailyEggFactorC = cfg_PoecilusDailyEggFactorC.value();
     m_PoecilusDailyVarianceEggFactorA = cfg_PoecilusDailyVarianceEggFactorA.value();
     m_PoecilusDailyVarianceEggFactorB = cfg_PoecilusDailyVarianceEggFactorB.value();
     m_PoecilusDailyVarianceEggFactorC = cfg_PoecilusDailyVarianceEggFactorC.value();
     m_PoecilusDormancyStartDateEarly = cfg_PoecilusDormancyStartDateEarly.value();
     m_PoecilusDormancyStartDate = cfg_PoecilusDormancyStartDate.value();
     m_PoecilusDormancyExitDateEarly = cfg_PoecilusDormancyExitDateEarly.value();
     m_PoecilusDormancyExitDate = cfg_PoecilusDormancyExitDate.value();
     m_Dormancy_threshold = cfg_dormancy_threshold.value();
     m_Dormancy_multiplier = cfg_dormancy_multiplier.value();
     m_Dormancy_exit_threshold = cfg_dormancy_exit_threshold.value();
     m_Dormancy_exit_multiplier = cfg_dormancy_exit_multiplier.value();
     m_PoecilusStandardDormancyChance = cfg_PoecilusStandardDormancyChance.value();
     m_PoecilusStandardDormancyExitChance = cfg_PoecilusStandardDormancyExitChance.value();
     m_DevelConst1 = cfg_PoecilusDevelopmentThresholds.value();
     PoecilusCupreus_Adult::SetEggFormationThreshold(cfg_EggFormationThreshold.value());
     //PoecilusCupreus_Adult::setDailyAdultMortalityWithSeason(cfg_PoecilusDailyAdultMortalityWithSeason.value());
     PoecilusCupreus_Adult::SetPoecilusTempShadowThreshold(cfg_PoecilusTempShadowThreshold.value());
     PoecilusCupreus_Adult::SetPoecilusLaiCoverThreshold(cfg_PoecilusCoverThreshold.value());
     Beetle_Larvae::SetLarvalDailyMort(cfg_PoecilusLarvalDailyTemperatureMort.value(), cfg_BeetleLarvalStagesNum.value(), cfg_PoecilusLarvalMortCategories.value());
     Beetle_Adult::SetAdultMovementTempThreshold(cfg_PoecilusAdultMovementTempThreshold.value());
     Beetle_Base::SetDevelopmentConstants(cfg_PoecilusDevelopmentConstants.value());
     Beetle_Base::SetDDepRange(cfg_PoecilusDDepRange.value());
     Beetle_Egg_List::SetDailyEggMort(cfg_PoecilusDailyEggMort.value());
     Beetle_Larvae::SetLDDepMort0(cfg_PoecilusLDDepMort0.value());
     Beetle_Larvae::SetLDDepMort1(cfg_PoecilusLDDepMort1.value());
     Beetle_Larvae::SetDailyLarvaMort(cfg_PoecilusDailyLarvalMort.value());
     Beetle_Adult::SetAdultDenDepMort0(cfg_PoecilusADDepMort0.value());
     Beetle_Adult::SetAdultDenDepMort1(cfg_PoecilusADDepMort1.value());
     m_PreOviRate = (cfg_PoecilusPreOviMax.value() - cfg_PoecilusPreOviMin.value()) / (cfg_PoecilusPreOviMaxTemp.value()- cfg_PoecilusPreOviMinTemp.value());
     // - - - - - - - - - - End assignments used for parameter input - - - - - - - - - -
 #ifdef __BEETLEPESTICIDE1
     //PestMortLocOutputOpen();
     m_InFieldNo = 0;
     m_OffFieldNo = 0;
     m_InCropNo = 0;
     m_InCropRef = m_TheLandscape->TranslateVegTypes(cfg_BeetleInCropRef.value());
 #endif
     // Create cfg_beetlestartnos adults
     for (int i = 0; i < cfg_Beetlestartnos.value(); i++)
     {
         Struct_Beetle aps(-1, -1, m_TheLandscape, this);
         do
         {
             aps.m_x = g_random_fnc(m_TheLandscape->SupplySimAreaWidth());
             aps.m_y = g_random_fnc(m_TheLandscape->SupplySimAreaHeight());
         }
         while (!IsStartHabitat(aps.m_x, aps.m_y));
         CreateObjects(bob_Adult, nullptr, nullptr, &aps, 1);
     }
     // To start all the beetles in the right state we loop through those created and force them to dormancy behaviour
     int temp_thread_number = omp_get_max_threads();
     for(int t=0; t<temp_thread_number; t++)
     {
         for(auto it = TheSubArrays[bob_Adult][t]->begin(); it != TheSubArrays[bob_Adult][t]->end(); ++it)
         {
             if((*it)->GetCurrentStateNo()>=0)
             {
                 dynamic_cast<PoecilusCupreus_Adult*>(*it)->SetState(tobs_Hibernating);
                 (*it)->SetAge(151); // Make sure starting adults are not seen as young ones
             }   
         }
     }
 }

References bob_Adult, cfg_BeetleInCropRef, cfg_BeetleLarvalStagesNum, cfg_Beetlestartnos, cfg_dormancy_exit_multiplier, cfg_dormancy_exit_threshold, cfg_dormancy_multiplier, cfg_dormancy_threshold, cfg_EggFormationThreshold, cfg_PoecilusADDepMort0, cfg_PoecilusADDepMort1, cfg_PoecilusAdultMovementTempThreshold, cfg_PoecilusCoverThreshold, cfg_PoecilusDailyEggFactorA, cfg_PoecilusDailyEggFactorB, cfg_PoecilusDailyEggFactorC, cfg_PoecilusDailyEggMort, cfg_PoecilusDailyLarvalMort, cfg_PoecilusDailyVarianceEggFactorA, cfg_PoecilusDailyVarianceEggFactorB, cfg_PoecilusDailyVarianceEggFactorC, cfg_PoecilusDDepRange, cfg_PoecilusDevelopmentConstants, cfg_PoecilusDevelopmentThresholds, cfg_PoecilusDormancyExitDate, cfg_PoecilusDormancyExitDateEarly, cfg_PoecilusDormancyStartDate, cfg_PoecilusDormancyStartDateEarly, cfg_PoecilusLarvalDailyTemperatureMort, cfg_PoecilusLarvalMortCategories, cfg_PoecilusLDDepMort0, cfg_PoecilusLDDepMort1, cfg_PoecilusPreOviMax, cfg_PoecilusPreOviMaxTemp, cfg_PoecilusPreOviMin, cfg_PoecilusPreOviMinTemp, cfg_PoecilusStandardDormancyChance, cfg_PoecilusStandardDormancyExitChance, cfg_PoecilusTempShadowThreshold, CreateObjects(), g_random_fnc(), Beetle_Population_Manager::IsStartHabitat(), Beetle_Population_Manager::m_BeetleLarvalStagesNum, Beetle_Population_Manager::m_DayDegs, Beetle_Population_Manager::m_DevelConst1, m_Dormancy_exit_multiplier, m_Dormancy_exit_threshold, m_Dormancy_multiplier, m_Dormancy_threshold, Beetle_Population_Manager::m_InCropNo, Beetle_Population_Manager::m_InCropRef, Beetle_Population_Manager::m_InFieldNo, Beetle_Population_Manager::m_OffFieldNo, m_PoecilusDailyEggFactorA, m_PoecilusDailyEggFactorB, m_PoecilusDailyEggFactorC, m_PoecilusDailyVarianceEggFactorA, m_PoecilusDailyVarianceEggFactorB, m_PoecilusDailyVarianceEggFactorC, m_PoecilusDormancyExitDate, m_PoecilusDormancyExitDateEarly, m_PoecilusDormancyStartDate, m_PoecilusDormancyStartDateEarly, m_PoecilusStandardDormancyChance, m_PoecilusStandardDormancyExitChance, Population_Manager::m_population_type, m_PreOviRate, Population_Manager_Base::m_SimulationName, Population_Manager_Base::m_TheLandscape, Struct_Beetle::m_x, Struct_Beetle::m_y, Beetle_Adult::SetAdultDenDepMort0(), Beetle_Adult::SetAdultDenDepMort1(), Beetle_Adult::SetAdultMovementTempThreshold(), Beetle_Egg_List::SetDailyEggMort(), Beetle_Larvae::SetDailyLarvaMort(), Beetle_Base::SetDDepRange(), Beetle_Base::SetDevelopmentConstants(), PoecilusCupreus_Adult::SetEggFormationThreshold(), Beetle_Larvae::SetLarvalDailyMort(), Beetle_Larvae::SetLDDepMort0(), Beetle_Larvae::SetLDDepMort1(), SetPc_Treatment_Mortalities(), PoecilusCupreus_Adult::SetPoecilusLaiCoverThreshold(), PoecilusCupreus_Adult::SetPoecilusTempShadowThreshold(), Landscape::SupplySimAreaHeight(), Landscape::SupplySimAreaWidth(), Population_Manager::TheSubArrays, tobs_Hibernating, TOP_PoecilusCupreus, Landscape::TranslateVegTypes(), CfgInt::value(), CfgFloat::value(), and CfgArray_Double::value().

◆ ~PoecilusCupreus_Population_Manager()

PoecilusCupreus_Population_Manager::~PoecilusCupreus_Population_Manager ( )

overridedefault

Destructor: the same as in base class.

Member Function Documentation

◆ CalcDailyEggFormationProgress()

double PoecilusCupreus_Population_Manager::CalcDailyEggFormationProgress ( double a_temp )

Calculates the additional development for egg formation for today.

                                                                                             {
     if (a_temp <= cfg_PoecilusPreOviMinTemp.value()) { return cfg_PoecilusPreOviMin.value(); }
     if (a_temp > cfg_PoecilusPreOviMaxTemp.value()) { return cfg_PoecilusPreOviMax.value(); }
     return 1.0 / (cfg_PoecilusPreOviFactorB.value() * a_temp + cfg_PoecilusPreOviFactorA.value() * a_temp * a_temp + cfg_PoecilusPreOviFactorC.value());
     //return cfg_PoecilusPreOviMin.value() + (a_temp - cfg_PoecilusPreOviMinTemp.value()) * m_PreOviRate;
 }

References cfg_PoecilusPreOviFactorA, cfg_PoecilusPreOviFactorB, cfg_PoecilusPreOviFactorC, cfg_PoecilusPreOviMax, cfg_PoecilusPreOviMaxTemp, cfg_PoecilusPreOviMin, cfg_PoecilusPreOviMinTemp, and CfgFloat::value().

Referenced by DayDegreeCalculations().

◆ CalcDailyRandomEggFactor()

void PoecilusCupreus_Population_Manager::CalcDailyRandomEggFactor ( double a_temp )

Updates DailyRandomEggFactor. Should be called daily

                                                                                      {
     m_DailyEggVariance = m_PoecilusDailyVarianceEggFactorB * a_temp + m_PoecilusDailyVarianceEggFactorA * a_temp *
         a_temp + m_PoecilusDailyVarianceEggFactorC;
 }

References m_DailyEggVariance, m_PoecilusDailyVarianceEggFactorA, m_PoecilusDailyVarianceEggFactorB, and m_PoecilusDailyVarianceEggFactorC.

◆ CalcDormancyChance()

void PoecilusCupreus_Population_Manager::CalcDormancyChance	(	double	a_temp,
		int	a_day
	)

Updates probability of enterning dormancy. Should be called daily

Updates m_DormancyChance. Should be called daily temp is a MINIMUM temperature

                                                                                                 {
     // no hibernation before the first of June
     if (a_day < m_PoecilusDormancyStartDateEarly) { m_DormancyChance = 0; }
     else
     {
         if (a_day < m_PoecilusDormancyStartDate && m_DormancyChance <= 0)
         {
             if (a_temp > m_Dormancy_threshold) { m_DormancyChance = 0; } // Set the initial chance to zero, too warm
             else { m_DormancyChance = m_PoecilusStandardDormancyChance; }
             // Set the initial chance to base chance
         }
         else
         {
             if (a_day == m_PoecilusDormancyStartDate && m_DormancyChance <= 0)
             {
                 m_DormancyChance = m_PoecilusStandardDormancyChance;
             }
             else
             {
                 // each day that has min temperature below 5 deg celsius increases dormancy chances
                 if (a_temp < m_Dormancy_threshold) { m_DormancyChance *= m_Dormancy_multiplier; }
                 // Increase the base chance by multiplyer for each cold day
             }
         }
     }
 }

References m_Dormancy_multiplier, m_Dormancy_threshold, m_DormancyChance, m_PoecilusDormancyStartDate, m_PoecilusDormancyStartDateEarly, and m_PoecilusStandardDormancyChance.

Referenced by DayDegreeCalculations().

◆ CalcDormancyExitChance()

void PoecilusCupreus_Population_Manager::CalcDormancyExitChance	(	double	a_temp,
		int	a_day
	)

Updates probability of leaving dormancy. Should be called daily

Updates m_DormancyExitChance. Should be called daily temp is a MAXIMUM temperature

                                                                                                     {
     if (a_day < m_PoecilusDormancyExitDateEarly) { m_DormancyExitChance = 0; }
     else
     {
         if (a_day > m_PoecilusDormancyExitDate) { m_DormancyExitChance = 0; }
         else
         {
             if (m_DormancyExitChance <= 0 && a_temp > m_Dormancy_exit_threshold)
             {
                 m_DormancyExitChance = m_PoecilusStandardDormancyExitChance;
             }
             else
             {
                 if (m_DormancyExitChance > 0)
                 {
                     if (a_temp> m_Dormancy_exit_threshold) m_DormancyExitChance *= m_Dormancy_exit_multiplier;
                 }
                 else { m_DormancyExitChance = 0; }
             }
         }
     }
 }

References m_Dormancy_exit_multiplier, m_Dormancy_exit_threshold, m_DormancyExitChance, m_PoecilusDormancyExitDate, m_PoecilusDormancyExitDateEarly, and m_PoecilusStandardDormancyExitChance.

Referenced by DayDegreeCalculations().

◆ CalcOvipositionLength()

double PoecilusCupreus_Population_Manager::CalcOvipositionLength ( double a_temp )

static

Uses day degrees to determine when the oviposition period is over.

                                                                                     {
     return 1.0 / (cfg_PoecilusOvipositionLength_A.value() + a_temp * cfg_PoecilusOvipositionLength_B.value() + a_temp * a_temp * cfg_PoecilusOvipositionLength_C.value());
 }

References cfg_PoecilusOvipositionLength_A, cfg_PoecilusOvipositionLength_B, cfg_PoecilusOvipositionLength_C, and CfgFloat::value().

Referenced by DayDegreeCalculations().

◆ CalculateDailyEggProduction()

void PoecilusCupreus_Population_Manager::CalculateDailyEggProduction ( double a_temp )

overridevirtual

Figure out the maximum number of eggs that can be laid today - must be overridden in descendent classes.

Implements Beetle_Population_Manager.

                                                                                         {
     Beetle_Adult::SetTodaysEggProduction(
         static_cast<int>(m_PoecilusDailyEggFactorB * a_temp + m_PoecilusDailyEggFactorA * a_temp * a_temp + m_PoecilusDailyEggFactorC));
 }

References m_PoecilusDailyEggFactorA, m_PoecilusDailyEggFactorB, m_PoecilusDailyEggFactorC, and Beetle_Adult::SetTodaysEggProduction().

◆ CreateObjects()

void PoecilusCupreus_Population_Manager::CreateObjects	(	int	ob_type,
		TAnimal *	a_pvo_ptr,
		void *	null,
		Struct_Beetle *	data,
		int	a_number
	)

overridevirtual

Method to add beetles to the population.

All PoecilusCupreus objects that are created must be created using this method. Data on the location and other attributes are passed in data, and the a_number to create in a_number.

Reimplemented from Beetle_Population_Manager.

                                              {
     for (int i = 0; i < a_number; i++)
     {
         if (ob_type == bob_Egg) { (*m_EList)[data->m_l->SupplyDayInYear()]->AddEgg(data->m_x, data->m_y); }
         if (ob_type == bob_Larva1)
         {
             const auto new_Larva(new PoecilusCupreus_Larvae1(data->m_x, data->m_y, data->m_l, this));
             PushIndividual(ob_type, new_Larva);
             IncLiveArraySize(ob_type);
         }
         if (ob_type == bob_Larva2)
         {
             const auto new_Larva(new PoecilusCupreus_Larvae2(data->m_x, data->m_y, data->m_l, this));
             PushIndividual(ob_type, new_Larva);
             IncLiveArraySize(ob_type);
         }
         if (ob_type == bob_Larva3)
         {
             // Will not create a new larva in a square already occupied
             const auto new_Larva = new PoecilusCupreus_Larvae3(data->m_x, data->m_y, data->m_l, this);
             PushIndividual(ob_type, new_Larva);
             IncLiveArraySize(ob_type);
         }
         if (ob_type == bob_Pupa)
         {
             const auto new_Pupa = new PoecilusCupreus_Pupae(data->m_x, data->m_y, data->m_l, this);
             //new_Pupa = new PoecilusCupreus_Pupae( data->x, data->y, data->L, this );
             PushIndividual(ob_type, new_Pupa);
             IncLiveArraySize(ob_type);
         }
         if (ob_type == bob_Adult)
         {
             const auto new_Adult = new PoecilusCupreus_Adult(data->m_x, data->m_y, data->m_l, this);
             PushIndividual(ob_type, new_Adult);
             IncLiveArraySize(ob_type);
         }
     }
 }

References bob_Adult, bob_Egg, bob_Larva1, bob_Larva2, bob_Larva3, bob_Pupa, Population_Manager::IncLiveArraySize(), Struct_Beetle::m_l, Struct_Beetle::m_x, Struct_Beetle::m_y, Population_Manager::PushIndividual(), and Landscape::SupplyDayInYear().

Referenced by PoecilusCupreus_Population_Manager().

◆ DayDegreeCalculations()

void PoecilusCupreus_Population_Manager::DayDegreeCalculations	(	int	a_dayinyear,
		bool	a_usehourly
	)

overrideprotectedvirtual

Does day degree development calculations here.

Reimplemented from Beetle_Population_Manager.

                                                                                                       {
     Beetle_Population_Manager::DayDegreeCalculations(a_dayinyear, a_usehourly);
     if (a_dayinyear == 0)
     {
         m_EggFormationProgress = {};
         m_OvipostitionlengthProgress = {};
     }
     const double temp = m_TheLandscape->SupplyTemp();
     SetMeanDistance(temp);
     for (int d = 0; d <= a_dayinyear; d++) {
         m_EggFormationProgress[d] += CalcDailyEggFormationProgress(temp);
         if (temp> 0.0) m_OvipostitionlengthProgress[d] += CalcOvipositionLength(temp);
     }
     CalcDormancyChance(m_TheLandscape->SupplyMinTemp(), a_dayinyear);
     CalcDormancyExitChance(m_TheLandscape->SupplyMaxTemp(), a_dayinyear);
 }

References CalcDailyEggFormationProgress(), CalcDormancyChance(), CalcDormancyExitChance(), CalcOvipositionLength(), Beetle_Population_Manager::DayDegreeCalculations(), m_EggFormationProgress, m_OvipostitionlengthProgress, Population_Manager_Base::m_TheLandscape, SetMeanDistance(), Landscape::SupplyMaxTemp(), Landscape::SupplyMinTemp(), and Landscape::SupplyTemp().

◆ DoLast()

void PoecilusCupreus_Population_Manager::DoLast ( )

inlineoverridevirtual

Adds output adult locations to DoLast.

Reimplemented from Beetle_Population_Manager.

                            {
 #ifdef CATASTROPHE2
         Catastrophe2();
 #else
         Catastrophe(); // This method must be overidden in descendent classes
 #endif
         DoBeetleActiveProbe(bob_Adult);
     }

References bob_Adult, Beetle_Population_Manager::Catastrophe(), Beetle_Population_Manager::Catastrophe2(), and Beetle_Population_Manager::DoBeetleActiveProbe().

◆ FertilizerMortality()

bool PoecilusCupreus_Population_Manager::FertilizerMortality ( FarmToDo a_event )

The method that deals with the fertilizer mortality for the larvae.

                                                                                    {
     const auto res = m_Pc_Treatment_Mortalities.find(a_event);
     if (res == m_Pc_Treatment_Mortalities.end()) { return false; }
     if (g_rand_uni_fnc() < res->second) { return true; }
     return false;
 }

References g_rand_uni_fnc(), and m_Pc_Treatment_Mortalities.

Referenced by OnFarmEventPupae().

◆ GetDormancyChance()

double PoecilusCupreus_Population_Manager::GetDormancyChance ( ) const

inline

Get the daily chance to enter dormancy.

300 { return m_DormancyChance; }

References m_DormancyChance.

Referenced by PoecilusCupreus_Adult::CheckDormancy().

◆ GetDormancyExitChance()

double PoecilusCupreus_Population_Manager::GetDormancyExitChance ( ) const

inline

Get the daily chance to exit dormancy.

302 { return m_DormancyExitChance; }

References m_DormancyExitChance.

Referenced by PoecilusCupreus_Adult::CheckDormancyExit().

◆ GetEggFormationProgress()

double PoecilusCupreus_Population_Manager::GetEggFormationProgress ( int a_day ) const

inline

Returns the current progress towards egg formation based on a given date to become reproductively active.

282 { return m_EggFormationProgress[a_day]; }

References m_EggFormationProgress.

Referenced by PoecilusCupreus_Adult::CheckReproduction().

◆ GetOvipositionPeriodProgress()

double PoecilusCupreus_Population_Manager::GetOvipositionPeriodProgress ( int a_day ) const

inline

Returns the current progress towards ending the oviposition period based on the first active day.

284 { return m_OvipostitionlengthProgress[a_day]; }

References m_OvipostitionlengthProgress.

Referenced by PoecilusCupreus_Adult::Ageing(), and PoecilusCupreus_Adult::CheckReproduction().

◆ OnFarmEvent()

bool PoecilusCupreus_Population_Manager::OnFarmEvent	(	FarmToDo	a_event,
		Beetle_Base *	a_caller
	)

overridevirtual

Method dealing with the farming mortalities.

Checks for any impact(usually mortality) as a result of a farm event.

Parameters

a_event	is the farm event to test mortality against
a_caller	is a pointer to the calling beetle object

Returns: true if killed

Implements Beetle_Population_Manager.

                                                                                                   {
     switch (a_event)
     {
     case sleep_all_day:
         break;
     case autumn_plough:
     case stubble_plough: // assumed to be the same as for autumn plough
     case stubble_cultivator_heavy: // assumed to be the same as for autumn plough
     case heavy_cultivator_aggregate: // assumed to be the same as for autumn plough
     case autumn_harrow:
     case preseeding_cultivator: // assumed to be the same as for harrow
     case preseeding_cultivator_sow: // assumed to be the same as for harrow
     case autumn_roll:
     case autumn_sow:
     case winter_plough:
     case deep_ploughing:
     case spring_plough:
     case spring_harrow:
     case shallow_harrow:
     case autumn_or_spring_plough:
     case strigling_sow:
     case bed_forming:
     case bulb_harvest:
         if (g_rand_uni_fnc() < a_caller->GetSoilCultivationMortality()) { return true; }
         break;
     case harvest:
     case green_harvest:
         if (g_rand_uni_fnc() < a_caller->GetHarvestMortality()) { return true; }
         break;
     case strigling:
     case strigling_hill:
         if (g_rand_uni_fnc() < a_caller->GetStriglingMortality()) { return true; }
         break;
     case insecticide_treat:
         if (g_rand_uni_fnc() < a_caller->GetInsecticideApplication()) { return true; }
         break;
     // Below here are all the no mortality operations
     case start: // NOLINT(bugprone-branch-clone)
         break;
     case trial_insecticidetreat:
         break;
     case trial_toxiccontrol:
         break;
     case syninsecticide_treat:
         break;
     case last_treatment:
         break;
     case spring_roll:
         break;
     case spring_sow:
         break;
     case fp_npks:
         break;
     case fp_npk:
         break;
     case fp_pk:
         break;
     case fp_p:
         break;
     case fp_k:
         break;
     case fp_sk:
         break;
     case fp_liquidNH3:
         break;
     case fp_slurry:
         break;
     case fp_manganesesulphate:
         break;
     case fp_ammoniumsulphate:
         break;
     case fp_manure:
         break;
     case fp_greenmanure:
         break;
     case fp_sludge:
         break;
     case fp_rsm:
         break;
     case fp_calcium:
         break;
     case fa_npks:
         break;
     case fa_npk:
         break;
     case fa_pk:
         break;
     case fa_p:
         break;
     case fa_k:
         break;
     case fa_sk:
         break;
     case fa_slurry:
         break;
     case fa_manganesesulphate:
         break;
     case fa_ammoniumsulphate:
         break;
     case fa_manure:
         break;
     case fa_greenmanure:
         break;
     case fa_sludge:
         break;
     case fa_rsm:
         break;
     case fa_calcium:
         break;
     case herbicide_treat:
         break;
     case growth_regulator:
         break;
     case fungicide_treat:
         break;
     case org_insecticide:
         break;
     case org_herbicide:
         break;
     case org_fungicide:
         break;
     case molluscicide:
         break;
     case row_cultivation:
         break;
     case flammebehandling:
         break;
     case hilling_up:
         break;
     case water:
         break;
     case swathing:
         break;
     case cattle_out:
         break;
     case pigs_out:
         break;
     case cut_to_hay:
         break;
     case cut_to_silage:
         break;
     case straw_chopping:
         break;
     case hay_turning:
         break;
     case hay_bailing:
         break;
     case stubble_harrowing:
         break;
     case burn_straw_stubble:
         break;
     case mow:
         break;
     case cut_weeds:
         break;
     case trial_control:
         break;
     case cattle_out_low:
         break;
     case product_treat:
         break;
     case glyphosate:
         break;
     case spring_sow_with_ferti:
         break;
     case flower_cutting:
         break;
     case straw_covering:
         break;
     case straw_removal:
         break;
     case pruning:
         break;
     case shredding:
         break;
     case fiber_covering:
         break;
     case fiber_removal:
         break;
     case fp_boron:
         break;
     case fp_n:
         break;
     case fp_nk:
         break;
     case fp_ns:
         break;
     case fp_nc:
         break;
     case autumn_sow_with_ferti:
         break;
     case harvest_bushfruit:
         break;
     case fp_cu:
         break;
     case fa_n:
         break;
     case fa_cu:
         break;
     case fa_boron:
         break;
     case fa_nk:
         break;
     case burn_top:
         break;
     case fa_pks:
         break;
     case fp_pks:
         break;
     case harvestshoots:
         break;
     case manual_weeding:
         break;
     case biocide:
         if (g_rand_uni_fnc() < (a_caller->GetInsecticideApplication()) * (1.0 - cfg_biocide_reduction_val.value())) return true;
         break;
     }
     return false;
 }

References autumn_harrow, autumn_or_spring_plough, autumn_plough, autumn_roll, autumn_sow, autumn_sow_with_ferti, bed_forming, biocide, bulb_harvest, burn_straw_stubble, burn_top, cattle_out, cattle_out_low, cfg_biocide_reduction_val, cut_to_hay, cut_to_silage, cut_weeds, deep_ploughing, fa_ammoniumsulphate, fa_boron, fa_calcium, fa_cu, fa_greenmanure, fa_k, fa_manganesesulphate, fa_manure, fa_n, fa_nk, fa_npk, fa_npks, fa_p, fa_pk, fa_pks, fa_rsm, fa_sk, fa_sludge, fa_slurry, fiber_covering, fiber_removal, flammebehandling, flower_cutting, fp_ammoniumsulphate, fp_boron, fp_calcium, fp_cu, fp_greenmanure, fp_k, fp_liquidNH3, fp_manganesesulphate, fp_manure, fp_n, fp_nc, fp_nk, fp_npk, fp_npks, fp_ns, fp_p, fp_pk, fp_pks, fp_rsm, fp_sk, fp_sludge, fp_slurry, fungicide_treat, g_rand_uni_fnc(), Beetle_Base::GetHarvestMortality(), Beetle_Base::GetInsecticideApplication(), Beetle_Base::GetSoilCultivationMortality(), Beetle_Base::GetStriglingMortality(), glyphosate, green_harvest, growth_regulator, harvest, harvest_bushfruit, harvestshoots, hay_bailing, hay_turning, heavy_cultivator_aggregate, herbicide_treat, hilling_up, insecticide_treat, last_treatment, manual_weeding, molluscicide, mow, org_fungicide, org_herbicide, org_insecticide, pigs_out, preseeding_cultivator, preseeding_cultivator_sow, product_treat, pruning, row_cultivation, shallow_harrow, shredding, sleep_all_day, spring_harrow, spring_plough, spring_roll, spring_sow, spring_sow_with_ferti, start, straw_chopping, straw_covering, straw_removal, strigling, strigling_hill, strigling_sow, stubble_cultivator_heavy, stubble_harrowing, stubble_plough, swathing, syninsecticide_treat, trial_control, trial_insecticidetreat, trial_toxiccontrol, CfgFloat::value(), water, and winter_plough.

Referenced by OnFarmEventPupae().

◆ OnFarmEventPupae()

bool PoecilusCupreus_Population_Manager::OnFarmEventPupae	(	FarmToDo	event,
		Beetle_Base *	a_caller
	)

overridevirtual

Method dealing with the farming mortalities this differs for pupae.

Reimplemented from Beetle_Population_Manager.

                                                                                                        {
     if (FertilizerMortality(a_event)) { return true; }
     return OnFarmEvent(a_event, a_caller);
 }

References FertilizerMortality(), and OnFarmEvent().

◆ SetMeanDistance()

void PoecilusCupreus_Population_Manager::SetMeanDistance ( double a_temp )

staticprotected

Determines the base distance moved today.

                                                                             {
     double daily_mean_distance;
     if (a_temp > cfg_PoecilusAdultMovementTempThreshold.value())
     {
         daily_mean_distance = cfg_PoecilusMoveDistanceParamA.value() * a_temp - cfg_PoecilusMoveDistanceParamB.value();
         // 1.81 * a_temp -12 = 3m at minimum temp
         if (daily_mean_distance < 0) daily_mean_distance = 0;
     }
     else { daily_mean_distance = 0; }
     Beetle_Adult::SetMoveDistribution(
         "NORMAL", std::to_string(daily_mean_distance) + " " + std::to_string(daily_mean_distance / 3.0));
 }

References cfg_PoecilusAdultMovementTempThreshold, cfg_PoecilusMoveDistanceParamA, cfg_PoecilusMoveDistanceParamB, Beetle_Base::SetMoveDistribution(), and CfgFloat::value().

Referenced by DayDegreeCalculations().

◆ SetPc_Treatment_Mortalities()

void PoecilusCupreus_Population_Manager::SetPc_Treatment_Mortalities ( )

Hard-coded for now method to set fertilizer mortality chances.

                                                                      {
     m_Pc_Treatment_Mortalities = {
         {fp_npks, 0.12}, {fp_npk, 0.12}, {fp_p, 0.12}, {fp_k, 0.12}, {fp_liquidNH3, 0.12}, {fp_manganesesulphate, 0.12},
         {fp_ammoniumsulphate, 0.12}, {fp_rsm, 0.12}, {fp_calcium, 0.8}, {fa_npks, 0.12}, {fa_npk, 0.12}, {fa_pk, 0.12},
         {fa_p, 0.12}, {fa_k, 0.12}, {fa_sk, 0.12}, {fa_manganesesulphate, 0.12}, {fa_ammoniumsulphate, 0.12},
         {fa_rsm, 0.12}, {fa_calcium, 0.8}, {herbicide_treat, 0.09},
         // 0.9 mortality and a low chance of using copper (10%)
         {fungicide_treat, 0.09}, // 0.9 mortality and a low chance of using copper (10%)
         {fa_cu, 0.9}, {fp_cu, 0.9}, {fa_boron, 0.12}, {fp_boron, 0.12}
     };
 }

References fa_ammoniumsulphate, fa_boron, fa_calcium, fa_cu, fa_k, fa_manganesesulphate, fa_npk, fa_npks, fa_p, fa_pk, fa_rsm, fa_sk, fp_ammoniumsulphate, fp_boron, fp_calcium, fp_cu, fp_k, fp_liquidNH3, fp_manganesesulphate, fp_npk, fp_npks, fp_p, fp_rsm, fungicide_treat, herbicide_treat, and m_Pc_Treatment_Mortalities.

Referenced by PoecilusCupreus_Population_Manager().

Member Data Documentation

◆ m_CurrentEggFormationProgress

double PoecilusCupreus_Population_Manager::m_CurrentEggFormationProgress {0.0}

protected

/brief The current sum for completion of egg formation

◆ m_DailyEggVariance

double PoecilusCupreus_Population_Manager::m_DailyEggVariance {0.0}

protected

Used to store the daily variance in egg production.

Referenced by CalcDailyRandomEggFactor().

◆ m_Dormancy_exit_multiplier

double PoecilusCupreus_Population_Manager::m_Dormancy_exit_multiplier {1.2}

protected

The multiplier to apply if above the threshold dormancy_exit_threshold.

Referenced by CalcDormancyExitChance(), and PoecilusCupreus_Population_Manager().

◆ m_Dormancy_exit_threshold

double PoecilusCupreus_Population_Manager::m_Dormancy_exit_threshold {8.0}

protected

Threshold for dormancy exit temperature. each day above that temperature increases hibernation exit chances.

Referenced by CalcDormancyExitChance(), and PoecilusCupreus_Population_Manager().

◆ m_Dormancy_multiplier

double PoecilusCupreus_Population_Manager::m_Dormancy_multiplier {1.2}

protected

The multiplier to apply if below the threshold dormancy_threshold.

Referenced by CalcDormancyChance(), and PoecilusCupreus_Population_Manager().

◆ m_Dormancy_threshold

double PoecilusCupreus_Population_Manager::m_Dormancy_threshold {5.0}

protected

Threshold temeperature. eac h day below that temperature increases hibernation chances.

Referenced by CalcDormancyChance(), and PoecilusCupreus_Population_Manager().

◆ m_DormancyChance

double PoecilusCupreus_Population_Manager::m_DormancyChance {0.0}

protected

Used to store the daily chance to enter dormancy.

Referenced by CalcDormancyChance(), and GetDormancyChance().

◆ m_DormancyExitChance

double PoecilusCupreus_Population_Manager::m_DormancyExitChance {0.0}

protected

Used to store the daily chance to exit dormancy.

Referenced by CalcDormancyExitChance(), and GetDormancyExitChance().

◆ m_EggFormationProgress

std::array<double, 365> PoecilusCupreus_Population_Manager::m_EggFormationProgress {}

protected

Storage for daily eggformation progress.

Referenced by DayDegreeCalculations(), and GetEggFormationProgress().

◆ m_OvipostitionlengthProgress

std::array<double, 365> PoecilusCupreus_Population_Manager::m_OvipostitionlengthProgress {}

protected

Storage for daily oviposition period progress.

Referenced by DayDegreeCalculations(), and GetOvipositionPeriodProgress().

◆ m_Pc_Treatment_Mortalities

TTreatmentvsMortalityList PoecilusCupreus_Population_Manager::m_Pc_Treatment_Mortalities

The list that summarises farming events that involve fertilizer applications and the mortalities they cause.

Referenced by FertilizerMortality(), and SetPc_Treatment_Mortalities().

◆ m_PoecilusDailyEggFactorA

double PoecilusCupreus_Population_Manager::m_PoecilusDailyEggFactorA {0.0}

protected

Parameter a used to calculate the number of eggs laid per day.

Referenced by CalculateDailyEggProduction(), and PoecilusCupreus_Population_Manager().

◆ m_PoecilusDailyEggFactorB

double PoecilusCupreus_Population_Manager::m_PoecilusDailyEggFactorB {0.0}

protected

Parameter b used to calculate the number of eggs laid per day.

Referenced by CalculateDailyEggProduction(), and PoecilusCupreus_Population_Manager().

◆ m_PoecilusDailyEggFactorC

double PoecilusCupreus_Population_Manager::m_PoecilusDailyEggFactorC {0.0}

protected

Parameter c used to calculate the number of eggs laid per day.

Referenced by CalculateDailyEggProduction(), and PoecilusCupreus_Population_Manager().

◆ m_PoecilusDailyVarianceEggFactorA

double PoecilusCupreus_Population_Manager::m_PoecilusDailyVarianceEggFactorA {0.0}

protected

Parameter a used to calculate variance in the number of eggs laid per day.

Referenced by CalcDailyRandomEggFactor(), and PoecilusCupreus_Population_Manager().

◆ m_PoecilusDailyVarianceEggFactorB

double PoecilusCupreus_Population_Manager::m_PoecilusDailyVarianceEggFactorB {0.0}

protected

Parameter b used to calculate variance in the number of eggs laid per day.

Referenced by CalcDailyRandomEggFactor(), and PoecilusCupreus_Population_Manager().

◆ m_PoecilusDailyVarianceEggFactorC

double PoecilusCupreus_Population_Manager::m_PoecilusDailyVarianceEggFactorC {0.0}

protected

Parameter c used to calculate variance in the number of eggs laid per day.

Referenced by CalcDailyRandomEggFactor(), and PoecilusCupreus_Population_Manager().

◆ m_PoecilusDormancyExitDate

int PoecilusCupreus_Population_Manager::m_PoecilusDormancyExitDate {}

protected

Latest day in the year for leaving dormancy.

Referenced by CalcDormancyExitChance(), and PoecilusCupreus_Population_Manager().

◆ m_PoecilusDormancyExitDateEarly

int PoecilusCupreus_Population_Manager::m_PoecilusDormancyExitDateEarly {}

protected

Earliest day in the year for leaving dormancy.

Referenced by CalcDormancyExitChance(), and PoecilusCupreus_Population_Manager().

◆ m_PoecilusDormancyStartDate

int PoecilusCupreus_Population_Manager::m_PoecilusDormancyStartDate {}

protected

Typical day in the year for entering dormancy.

Referenced by CalcDormancyChance(), and PoecilusCupreus_Population_Manager().

◆ m_PoecilusDormancyStartDateEarly

int PoecilusCupreus_Population_Manager::m_PoecilusDormancyStartDateEarly {}

protected

Earliest day in the year for entering dormancy.

Referenced by CalcDormancyChance(), and PoecilusCupreus_Population_Manager().

◆ m_PoecilusStandardDormancyChance

double PoecilusCupreus_Population_Manager::m_PoecilusStandardDormancyChance {}

protected

Base chance per day of entering dormancy.

Referenced by CalcDormancyChance(), and PoecilusCupreus_Population_Manager().

◆ m_PoecilusStandardDormancyExitChance

double PoecilusCupreus_Population_Manager::m_PoecilusStandardDormancyExitChance {}

protected

Base chance per day of leaving dormancy.

Referenced by CalcDormancyExitChance(), and PoecilusCupreus_Population_Manager().

◆ m_PreOviRate

double PoecilusCupreus_Population_Manager::m_PreOviRate

protected

Rate of change with temperature for preovipostion development (calculated from other configs)

Referenced by PoecilusCupreus_Population_Manager().

The documentation for this class was generated from the following files:

/builds/ALMaSS/ALMaSS_MIDox/Beetles/PoecilusCupreus_All.h
/builds/ALMaSS/ALMaSS_MIDox/Beetles/PoecilusCupreus_All.cpp

Public Member Functions

Static Public Member Functions

Public Attributes

Protected Member Functions

Static Protected Member Functions

Protected Attributes

Constructor & Destructor Documentation

◆ PoecilusCupreus_Population_Manager()

◆ ~PoecilusCupreus_Population_Manager()

Member Function Documentation

◆ CalcDailyEggFormationProgress()

◆ CalcDailyRandomEggFactor()

◆ CalcDormancyChance()

◆ CalcDormancyExitChance()

◆ CalcOvipositionLength()

◆ CalculateDailyEggProduction()

◆ CreateObjects()

◆ DayDegreeCalculations()

◆ DoLast()

◆ FertilizerMortality()

◆ GetDormancyChance()

◆ GetDormancyExitChance()

◆ GetEggFormationProgress()

◆ GetOvipositionPeriodProgress()

◆ OnFarmEvent()

◆ OnFarmEventPupae()

◆ SetMeanDistance()

◆ SetPc_Treatment_Mortalities()

Member Data Documentation

◆ m_CurrentEggFormationProgress

◆ m_DailyEggVariance

◆ m_Dormancy_exit_multiplier

◆ m_Dormancy_exit_threshold

◆ m_Dormancy_multiplier

◆ m_Dormancy_threshold

◆ m_DormancyChance

◆ m_DormancyExitChance

◆ m_EggFormationProgress

◆ m_OvipostitionlengthProgress

◆ m_Pc_Treatment_Mortalities

◆ m_PoecilusDailyEggFactorA

◆ m_PoecilusDailyEggFactorB

◆ m_PoecilusDailyEggFactorC

◆ m_PoecilusDailyVarianceEggFactorA

◆ m_PoecilusDailyVarianceEggFactorB

◆ m_PoecilusDailyVarianceEggFactorC

◆ m_PoecilusDormancyExitDate

◆ m_PoecilusDormancyExitDateEarly

◆ m_PoecilusDormancyStartDate

◆ m_PoecilusDormancyStartDateEarly

◆ m_PoecilusStandardDormancyChance

◆ m_PoecilusStandardDormancyExitChance

◆ m_PreOviRate