Beetle_Egg_List Class Reference

The class describing the beetle Egg_List objects. More...

#include <Beetle_BaseClasses.h>

Inheritance diagram for Beetle_Egg_List:

Public Member Functions
	Beetle_Egg_List (int today, Beetle_Population_Manager *a_bpm_ptr, Landscape *L)
	Egg_List class constructor. More...
void	Step () override
	Egg_List class Step code. More...
void	BeginStep () override
	Egg_List class BeginStep code. More...
void	AddEgg (const int x, const int y)
	Add an egg to the list. More...
void	Clear ()
void	Supply_m_Location (const int i, int &a_x, int &a_y) const
	supplies the x-coordinate of a specific egg in the list More...
int	SupplyEggNumber () const
double	GetStriglingMortality () const override
	Mortality by Strigling: similar for all forms– should use base class method. More...
double	GetSoilCultivationMortality () const override
	the method overrides the method that returns the mortality due to soil cultivation More...
double	GetInsecticideApplication () const override
	the method overrides the method that returns the mortality due to insecticide application More...
double	GetHarvestMortality () const override
	the method overrides the method that returns the mortality due to harvest More...
void	ExtremeTempMortality (double a_threshold)
	Extreme temperature mortality, this is only used for ladybird for now. More...
void	CannibalismMortality (Eigen::MatrixXi &a_death_map, int &a_kill_num)
	Death caused by cannibalism. This is only used by lady birds. More...
Public Member Functions inherited from Beetle_Base
	Beetle_Base (int a_x, int a_y, Landscape *a_l_ptr, Beetle_Population_Manager *a_bpm_ptr)
	Beetle_Base Constructor. More...
virtual void	ReInit (int a_x, int a_y, Landscape *a_l_ptr, Beetle_Population_Manager *a_bpm_ptr)
	ReInit for object pool. More...
virtual void	SetState (const TTypesOfBeetleState a_state)
	Used to force a beetle state (e.g. at start of the simulation) More...
virtual void	StDie ()
	Common state Die. More...
void	CopyMyself (int a_beetle)
	For experimental purposes. More...
virtual bool	GetDensityDependentMortality ()
	The density dependent mortality calculation (cannibalism) defaults to none. More...
void	KillAndRemoveFromMap ()
	Kills the beetle - this version forces the beetle to re-enter the Step code and call st_Dying. More...
void	IncDensity (int a_x, int a_y, int a_lifestage)
	The method inreases the number of beetles in this specific location by one. Used when called by a beetle of different lifestage than the one incremented. More...
void	DecDensity (int a_x, int a_y)
	The method decreases the number of beetles in this specific location by one. More...
void	KillOneInMap (int a_x, int a_y, int a_lifestage)
	The method decreases the number of beetles in this specific location by one. More...
void	IncDensity (const int a_x, const int a_y)
	The method inreases the number of beetles in this specific location by one. More...
void	DecDensity (const int a_x, const int a_y, const int a_lifestage)
	The method decreases the number of beetles in this specific location by one. Used when called by a beetle of different lifestage than the one dying. More...
int	GetDensity (int a_x, int a_y) const
	The method to return the number of beetles in this specific location. More...
int	GetDensityRange (int a_x, int a_y, int a_range) const
	The method to return the number of beetles in this specific location with a range. More...
int	GetDensityRangeEdge (int a_x, int a_y, int a_range) const
	The method to return the number of beetles in this specific location with a range. More...
virtual double	GetDevelopmentConstants (const int a_i) const
	the method returns the larvae development constant to be used in day degrees calculation More...
int	WhatState () override
	Return the beetle state as an integer. More...
Public Member Functions inherited from TAnimal
	TAnimal (int x, int y, Landscape *L)
	The TAnimal constructor saving the x,y, location and the landscape pointer. More...
	TAnimal (int x, int y)
	The TAnimal constructor saving the x,y used if landscape is already set. More...
void	SetGuardMapIndex (int a_index_x, int a_index_y)
	Set the guard map index, this is used to avoid two animals operating in the same location when using multithread. More...
unsigned	SupplyFarmOwnerRef () const
	Get the current location farm ref if any. More...
AnimalPosition	SupplyPosition () const
	Returns the objects location and habitat type and veg type. More...
APoint	SupplyPoint () const
	Returns the objects location in ALMaSS coordinates. More...
int	SupplyPolygonRef () const
	Returns the polygon reference where the object is located. More...
TTypesOfLandscapeElement	SupplyPolygonType () const
	Returns the polygon type where the object is located. More...
int	Supply_m_Location_x () const
	Returns the ALMaSS x-coordinate. More...
int	Supply_m_Location_y () const
	Returns the ALMaSS y-coordinate. More...
int	SupplyGuardCellX () const
	Returns the x-index to the guard cell. More...
int	SupplyGuardCellY () const
	Returns the y-index to the guard cell. More...
int	SupplyAge () const
	Returns the animals age in days. More...
void	SetAge (int a_age)
	Sets the animals age in days. More...
virtual void	KillThis ()
	Sets all parameters ready for object destruction. More...
virtual void	CopyMyself ()
	Used to copy the object details to another in descendent classes. More...
void	SetX (const int a_x)
	Sets the x-coordinate. More...
void	SetY (const int a_y)
	Sets the y-coordinate. More...
virtual void	ReinitialiseObject (int a_x, int a_y, Landscape *a_l_ptr)
virtual void	ReinitialiseObject (int a_x, int a_y)
	Used to re-use an object - must be implemented in descendent classes. More...
virtual void	Dying ()
	A wrapped for KillThis - ideally should not be used. More...
void	CheckManagement ()
	Used to start a check for any management related effects at the objects current location. More...
void	CheckManagementXY (int a_x, int a_y)
	Used to start a check for any management related effects at x,y. More...
Public Member Functions inherited from TALMaSSObject
int	GetCurrentStateNo () const
	Returns the current state number. More...
void	SetCurrentStateNo (int a_num)
	Sets the current state number. More...
bool	GetStepDone () const
	Returns the step done indicator flag. More...
void	SetStepDone (bool a_bool)
	Sets the step done indicator flag. More...
virtual void	EndStep ()
	EndStep behaviour - must be implemented in descendent classes. More...
void	ReinitialiseObjectBase ()
	Used to initialise an object. More...
	TALMaSSObject ()
	The constructor for TALMaSSObject. More...
virtual	~TALMaSSObject ()=default
	The destructor for TALMaSSObject. More...

Static Public Member Functions
static void	SetEgg_SoilCultivationMortality (const double a_value)
	Set egg soil mortality parameter. More...
static void	SetEgg_InsecticideApplication (const double a_value)
	Set Larval insecticide mortality parameter. More...
static void	SetDailyEggMort (const double a_value)
	Set the daily fixed mortality probability. More...
static void	SetEgg_StriglingMort (const double a_value)
	Set mechanical weeding mortality parameter. More...
static void	SetEgg_HarvestMort (const double a_value)
	Set harvest mortality parameter. More...
static void	SetEggPppElimRate (const double a_rate)
static void	SetEggPppThreshold (const double a_thresh)
static void	SetEggPppEffectProb (const double a_conc)
static void	SetEggPppEffectProbDecay (const double a_decay)
Static Public Member Functions inherited from Beetle_Base
static int	GetDensityStage (int a_x, int a_y, unsigned a_stage)
	The method to return the number of beetles in this specific location for a given stage. More...
static int	GetDensityStages (int a_x, int a_y, int a_numberstageStart, int a_numberstangeEnd)
	The method to return the number of beetles in this specific location, summing multiple stages. More...
static int	GetDensityRangeStages (int a_x, int a_y, int a_range, int a_numberstageStart, int a_numberstangeEnd)
	The method to return the number of beetles in this specific location with a range, summing multiple stages. More...
static void	SetDevelopmentConstants (const std::vector< double > &a_value)
	Set the day degree constant. More...
static void	SetTodaysTempCategory (int a_category)
	Set the soil temperature category used for calculatiung mortality steps. More...
static void	SetMoveDistribution (const string &a_type_str, const string &a_args_str)
	Set the movement distribution. More...
static void	SetBeetleSuitableForHibernation (const TTovList &a_list)
	Set the list of tovs that are suitable for hibernation. More...
static void	SetBeetleReproductionLandscape (const TToleList &a_list)
	Set the list of toles that the beetles are allowed to reproduce upon. More...
static void	SetBeetleHalfReproductionLandscape (const TToleList &a_list)
	Set the list of toles that the beetles are allowed to reproduce upon, but that yield half of normal fertility (bembidion) More...
static void	SetDipsersalDayDegrees (const int a_value)
static void	SetMaxShortRangeAttempts (const int a_value)
static void	SetDDepRange (const int a_value)
	Set density-dependent range parameter. More...
static void	SizeBeetleMap (const int a_value)
	Size the lifestage map. More...
static void	SetBeetleMap (const int a_value, SimplePositionMapInt *a_map_ptr)
	Set lifestage map. More...
static int	ChooseDirection (const double(&a_probabilities)[8])
	The function that draws the random number and checks in which interval in the probabilities vector are we This would be the direction the beetle will take. More...
Static Public Member Functions inherited from TAnimal
static void	SetSimulationWidth (int a_value)
	Sets the simulation width. More...
static void	SetSimulationHeight (int a_value)
	Sets the simulation height. More...
static void	SetDayInYear (int a_value)
	Sets the day in year attribute. More...
static void	SetOurLandscape (Landscape *a_value)
	Sets the landscape pointer. More...
static void	SetTempToday (double a_value)
	Sets the temperature today attribute. More...
Static Public Member Functions inherited from TALMaSSObject
static void	OnArrayBoundsError ()
	Used for debugging only, tests basic object properties. More...

Protected Member Functions
void	InternalPesticideHandlingAndResponse () override
	Handle pesticide events code for the beetle. More...
virtual TTypesOfBeetleState	St_Develop ()
	Egg_List state development. More...
virtual TTypesOfBeetleState	St_Hatch ()
	Egg_List state hatching. More...
bool	DailyMortality () override
	Checks daily mortality returns true on death. More...
Protected Member Functions inherited from Beetle_Base
virtual void	Init (Beetle_Population_Manager *a_bpm_ptr)
	Init for a beetle object. More...
bool	OnFarmEvent (FarmToDo event) override
	the farming event mortality. This is the function that is used for all the beetles. It calls methods that are re-defined by object and by method. More...
virtual bool	CheckManagementBeetle ()
virtual double	TempRelatedMortality ()
	Basic movement for beetle. More...
virtual int	GetDDepthRange () const
	range at which density dependent mortality is applied - base class does not override, but others might need to More...
void	Beetle_1M_Move (int a_dist)
	The function that calculates the cumulative probability for the movement direction. It calls the movement factor method and processes ints result to adjust "p" (by reference) More...
virtual bool	IsLocationAllowed (int x, int y)
virtual double	GetShortRangeDistance () const
	returns the length of the short range hop More...
virtual double	MovementFactor (int x, int y, int x1, int y1)
	function that calculates the factor that is taken into account when considering the movement of the individual More...
virtual double	GetDailyMortalityRate () const
	method returns the rate of the background mortality More...
Protected Member Functions inherited from TAnimal
void	CorrectWrapRound ()
	Corrects wrap around co-ordinate problems. More...

Protected Attributes
TListOfEggs	m_EggList
	The list of eggs. More...
int	m_DayMade
	Records the day hatched for development calculations. More...
Protected Attributes inherited from Beetle_Base
TTypesOfBeetleState	m_CurrentBState { tobs_Initiation }
	Current behavioural state. More...
Beetle_Population_Manager *	m_OurPopulation { nullptr }
	Pointer to the population manager. More...
double	m_BodyBurden { -1.0 }
	Current body burden of pesticide. More...
double	m_CurrentPppEffectProb { -1.0 }
	Current effect probability. More...
unsigned	m_Lifestage { 0 }
	This is a useful parameter holding the beetle type (this includes larval stages) More...
Protected Attributes inherited from TAnimal
int	m_Location_x
	The objects ALMaSS x coordinate. More...
int	m_Location_y
	The objects ALMaSS y coordinate. More...
int	m_guard_cell_x
	The index x to the guard cell. More...
int	m_guard_cell_y
	The index y to the guard cell. More...
int	m_AgeDays {0}
	To hold the age in days. More...
PesticideToxicity	m_my_pesticide
Protected Attributes inherited from TALMaSSObject
int	m_CurrentStateNo
	The basic state number for all objects - '-1' indicates death. More...
bool	m_StepDone
	Indicates whether the iterative step code is done for this timestep. More...

Static Protected Attributes
static double	m_DailyEggMort = 0.007
	Daily fixed mortality probability. More...
static double	m_Egg_SoilCultivationMortality = 0
	The egg soil mortality parameter. More...
static double	m_Egg_HarvestMort = 0
	The egg harvest mortality parameter. More...
static double	m_Egg_StriglingMort = 0
	The egg strigling mortality parameter. More...
static double	m_Egg_InsecticideApplication = 0
	The egg nsecticide mortality parameter. More...
static double	m_BeetleEggPPPElimRate = 0
static double	m_BeetleEPPPThreshold = 0
static double	m_BeetleEPPPEffectProb = 0
static double	m_BeetleEPPPEffectProbDecay = 0
Static Protected Attributes inherited from Beetle_Base
static vector< double >	m_DevelopmentConstants = {}
	Day degree constant, the target to reach before next stage. More...
static std::unique_ptr< probability_distribution >	m_Move_distribution = nullptr
	Probabilty of adult movement by distance to be defined by the probability type and parameters. More...
static TTovList	m_BeetleSuitableForHibernation = {tov_Undefined}
	the list of tovs that are suitable for hibernation More...
static TToleList	m_BeetleReproductionLandscape = {tole_Foobar}
	the list of toles that the beetles are allowed to reproduce upon More...
static TToleList	m_BeetleHalfReproductionLandscape = {tole_Foobar}
	the list of toles that the beetles are allowed to reproduce upon, but that yield half of normal fertility (bembidion) More...
static int	m_DipsersalDayDegrees = 8
static int	m_DDepRange = 3
	The depth of the surrounding cells for density dependence calculations in adults. More...
static int	m_MaxShortRangeAttempts = 1
	The number of tries allowed to find a short range legal move. More...
static int	m_TodaysTempCategory = 0
	Set the soiltemperature category used for calculatiung mortality steps. More...
Static Protected Attributes inherited from TAnimal
static Landscape *	m_OurLandscape = nullptr
	A pointer to the landscape object shared with all TAnimal objects. More...
static int	m_SimulationWidth = 0
	A static member for the simulation width because it is often used by descendent classes. More...
static int	m_SimulationHeight = 0
	A static member for the simulation height because it is often used by descendent classes. More...
static double	m_TemperatureToday = 0.0
	A holder for the temperature today shared with all TAnimal objects. More...
static int	m_DayInYear = 0
	A holder for the day in year shared with all TAnimal objects. More...

Additional Inherited Members
Static Public Attributes inherited from Beetle_Base
static vector< SimplePositionMapInt * >	m_BeetleMaps = {}
	A list of pointers to the specific map for a beetle lifestage. More...

Detailed Description

The class describing the beetle Egg_List objects.

Constructor & Destructor Documentation

Beetle_Egg_List()

Beetle_Egg_List::Beetle_Egg_List	(	int	today,
		Beetle_Population_Manager *	a_bpm_ptr,
		Landscape *	L
	)

Egg_List class constructor.

Beetle egg list constructor.

The egg list is an optimisation to reduce memory and time to run it means that there are only 365 of them possible and that each on contains all the eggs laid on that day. The only real problem is that there is no longer a link from parent to offspring - so this version cannot be used with genetics without adding the genes to the APoint struct.

                                                                                                   : Beetle_Base(
    0, 0, L, a_bpm_ptr) {
    m_DayMade = today;
    m_Lifestage = bob_Egg;
    m_EggList.resize(omp_get_max_threads());
}

References bob_Egg, m_DayMade, m_EggList, and Beetle_Base::m_Lifestage.

Member Function Documentation

AddEgg()

void Beetle_Egg_List::AddEgg ( const int  x, const int  y  )

inline

Add an egg to the list.

                                          {
        APoint E;
        E.m_x = x;
        E.m_y = y;
        m_EggList[omp_get_thread_num()].push_front(E);
        IncDensity(x, y);
    }

References Beetle_Base::IncDensity(), m_EggList, APoint::m_x, and APoint::m_y.

BeginStep()

void Beetle_Egg_List::BeginStep ( void  )

overridevirtual

Egg_List class BeginStep code.

Implements Beetle_Base.

                                {
    DailyMortality(); // should be dealt with for each species separately
    // based on the constants injected in the inherited class
}

References DailyMortality().

CannibalismMortality()

void Beetle_Egg_List::CannibalismMortality	(	Eigen::MatrixXi &	a_death_map,
		int &	a_kill_num
	)

Death caused by cannibalism. This is only used by lady birds.

                                                                                     {
 
    //we can run in parallel because we don't track the pointer at each location
    int temp_thread_num = omp_get_max_threads();
 
    bool is_enough_eggs = false;
    for (int thread_id=0; thread_id < temp_thread_num; thread_id++){
        auto prev_point = m_EggList[thread_id].before_begin();
        for (auto point = m_EggList[thread_id].begin(); point != m_EggList[thread_id].end();){
            bool not_deleted_flag = true;
            if(a_death_map((*point).m_y, (*point).m_x) > 0){
                a_death_map((*point).m_y, (*point).m_x) -= 1;
                point = m_EggList[omp_get_thread_num()].erase_after(prev_point); // Code for kill it
                not_deleted_flag = false;
                a_kill_num -= 1;
                //DecDensity((*point).m_x, (*point).m_y, 0);
            }
            if(a_kill_num <= 0){
                is_enough_eggs = true;
                break;
            }
            if(not_deleted_flag){
                prev_point = point;
                ++point;
            }
        }
        if(is_enough_eggs){
            break;
        }
    }
}

References m_EggList.

Clear()

void Beetle_Egg_List::Clear ( )

inline

/brief Empty the egg list

                 { 
        int max_thread_num = omp_get_max_threads();
        for(int i = 0; i < max_thread_num; i++) {
            m_EggList[i].clear();
        }
    }

References m_EggList.

DailyMortality()

bool Beetle_Egg_List::DailyMortality ( )

overrideprotectedvirtual

Checks daily mortality returns true on death.

Reimplemented from Beetle_Base.

                                     {
    // Needs to go through all eggs in the list and test for background mortality
    // and while we are here for OnFarmEvent stuff
 
    const TTypesOfBeetleState behaviour = m_CurrentBState; // Use only to be sure we don't change it inadvertently
 
    #pragma omp parallel
    {
    auto prev_point = m_EggList[omp_get_thread_num()].before_begin();
    for (auto point = m_EggList[omp_get_thread_num()].begin(); point != m_EggList[omp_get_thread_num()].end(); )
    {
        bool not_deleted_flag = true;
        if (g_rand_uni_fnc() < m_DailyEggMort)
        {
            // Remove the Egg it is dead
            int temp_guard_x_index = (*point).m_x / cfg_MapGuardCellSize.value();
            int temp_guard_y_index = (*point).m_y / cfg_MapGuardCellSize.value();
            m_OurPopulation->SetGuardMapElement(temp_guard_x_index, temp_guard_y_index);
            DecDensity((*point).m_x, (*point).m_y);
            point = m_EggList[omp_get_thread_num()].erase_after(prev_point); // Code for kill it
            m_OurPopulation->UnsetGuardMapElement(temp_guard_x_index, temp_guard_y_index);
            not_deleted_flag = false;
        }
        else
        {
            FarmToDo event;
            int res = 0; // used to iterate through the event list
            while ((event = static_cast<FarmToDo>(m_OurLandscape->
                SupplyLastTreatment((*point).m_x, (*point).m_y, &res))) != sleep_all_day)
            {
                if (OnFarmEvent(event))
                {
                    // Remove the Egg it is dead
                    int temp_guard_x_index = (*point).m_x / cfg_MapGuardCellSize.value();
                    int temp_guard_y_index = (*point).m_y / cfg_MapGuardCellSize.value();
                    m_OurPopulation->SetGuardMapElement(temp_guard_x_index, temp_guard_y_index);
                    DecDensity((*point).m_x, (*point).m_y);
                    point = m_EggList[omp_get_thread_num()].erase_after(prev_point); // Code for kill it
                    m_OurPopulation->UnsetGuardMapElement(temp_guard_x_index, temp_guard_y_index);
                    not_deleted_flag = false;
                    break; //it is dead and removed, escape the llop
                }
            }
        }
 
        if(not_deleted_flag){
            prev_point = point;
            ++point;
        }
    }
    }
 
    // We need to reset the m_CurrentBState in case its changed.
    // There is just one state for all the eggs for this day
    m_CurrentBState = behaviour;
    return true; // always returns true
}

References cfg_MapGuardCellSize, Beetle_Base::DecDensity(), g_rand_uni_fnc(), Beetle_Base::m_CurrentBState, m_DailyEggMort, m_EggList, TAnimal::m_OurLandscape, Beetle_Base::m_OurPopulation, Beetle_Base::OnFarmEvent(), Population_Manager::SetGuardMapElement(), sleep_all_day, Population_Manager::UnsetGuardMapElement(), and CfgInt::value().

Referenced by BeginStep().

ExtremeTempMortality()

void Beetle_Egg_List::ExtremeTempMortality

(

double

a_threshold

)

Extreme temperature mortality, this is only used for ladybird for now.

                                                             {
    #pragma omp parallel
    {
    int thread_num = omp_get_thread_num();
    auto prev_point = m_EggList[thread_num].before_begin();
    for (auto point = m_EggList[thread_num].begin(); point != m_EggList[thread_num].end(); )
    {
        if (g_rand_uni_fnc() < a_threshold)
        {
            // Remove the Egg it is dead
            int temp_guard_x_index = (*point).m_x / cfg_MapGuardCellSize.value();
            int temp_guard_y_index = (*point).m_y / cfg_MapGuardCellSize.value();
            m_OurPopulation->SetGuardMapElement(temp_guard_x_index, temp_guard_y_index);
            DecDensity((*point).m_x, (*point).m_y);
            point = m_EggList[thread_num].erase_after(prev_point); // Code for kill it
            m_OurPopulation->UnsetGuardMapElement(temp_guard_x_index, temp_guard_y_index);
        }
        else{
            prev_point = point;
            ++point;
        }
    }
    }
}

References cfg_MapGuardCellSize, Beetle_Base::DecDensity(), g_rand_uni_fnc(), m_EggList, Beetle_Base::m_OurPopulation, Population_Manager::SetGuardMapElement(), Population_Manager::UnsetGuardMapElement(), and CfgInt::value().

GetHarvestMortality()

double Beetle_Egg_List::GetHarvestMortality ( ) const

inlineoverridevirtual

the method overrides the method that returns the mortality due to harvest

Reimplemented from Beetle_Base.

{ return m_Egg_HarvestMort; }

References m_Egg_HarvestMort.

GetInsecticideApplication()

double Beetle_Egg_List::GetInsecticideApplication ( ) const

inlineoverridevirtual

the method overrides the method that returns the mortality due to insecticide application

Reimplemented from Beetle_Base.

{ return m_Egg_InsecticideApplication; }

References m_Egg_InsecticideApplication.

GetSoilCultivationMortality()

double Beetle_Egg_List::GetSoilCultivationMortality ( ) const

inlineoverridevirtual

the method overrides the method that returns the mortality due to soil cultivation

Reimplemented from Beetle_Base.

{ return m_Egg_SoilCultivationMortality; }

References m_Egg_SoilCultivationMortality.

GetStriglingMortality()

double Beetle_Egg_List::GetStriglingMortality ( ) const

inlineoverridevirtual

Mortality by Strigling: similar for all forms– should use base class method.

Reimplemented from Beetle_Base.

{ return m_Egg_StriglingMort; }

References m_Egg_StriglingMort.

InternalPesticideHandlingAndResponse()

void Beetle_Egg_List::InternalPesticideHandlingAndResponse ( )

overrideprotectedvirtual

Handle pesticide events code for the beetle.

If the body burden exceeds the trigger then an effect is tested for and implemented depending on the pesticide type.

Reimplemented from Beetle_Base.

                                                           {
    // Test against the threshold level for larvae to determine if an effect needs to be tested for
    if (m_BodyBurden > m_BeetleEPPPThreshold)
    {
        // We are above the PPP body burden threshold, so make a test for effect
        switch (m_OurLandscape->SupplyPesticideType())
        {
        case ttop_NoPesticide:
        case ttop_ReproductiveEffects: // Reproductive effects
            // TODO
            break;
        case ttop_AcuteEffects: // Acute mortality
        case ttop_AcuteEffectsDoseResponse: // Acute mortality
            if (g_rand_uni_fnc() < m_BeetleEPPPEffectProb) { KillAndRemoveFromMap(); }
            break;
        case ttop_AcuteDelayedEffects:
            if (g_rand_uni_fnc() < m_BeetleEPPPEffectProb * m_BodyBurden)
            {
                m_CurrentPppEffectProb = m_BeetleEPPPEffectProbDecay;
            }
            break;
        case ttop_MultipleEffects:
            break;
        default:
            g_msg->Warn(
                "Unknown pesticide type used in Beetle_Adult::InternalPesticideHandlingAndResponse() pesticide code ",
                m_OurLandscape->SupplyPesticideType());
            exit(47);
        }
    }
}

References g_msg, g_rand_uni_fnc(), Beetle_Base::KillAndRemoveFromMap(), m_BeetleEPPPEffectProb, m_BeetleEPPPEffectProbDecay, m_BeetleEPPPThreshold, Beetle_Base::m_BodyBurden, Beetle_Base::m_CurrentPppEffectProb, TAnimal::m_OurLandscape, Landscape::SupplyPesticideType(), ttop_AcuteDelayedEffects, ttop_AcuteEffects, ttop_AcuteEffectsDoseResponse, ttop_MultipleEffects, ttop_NoPesticide, ttop_ReproductiveEffects, and MapErrorMsg::Warn().

SetDailyEggMort()

static void Beetle_Egg_List::SetDailyEggMort ( const double  a_value )

inlinestatic

Set the daily fixed mortality probability.

{ m_DailyEggMort = a_value; }

References m_DailyEggMort.

Referenced by Beetle_Population_Manager::Beetle_Population_Manager(), Ladybird_Population_Manager::DoEggDailyMortalityActions(), and PoecilusCupreus_Population_Manager::PoecilusCupreus_Population_Manager().

SetEgg_HarvestMort()

static void Beetle_Egg_List::SetEgg_HarvestMort ( const double  a_value )

inlinestatic

Set harvest mortality parameter.

{ m_Egg_HarvestMort = a_value; }

References m_Egg_HarvestMort.

Referenced by Beetle_Population_Manager::Beetle_Population_Manager().

SetEgg_InsecticideApplication()

static void Beetle_Egg_List::SetEgg_InsecticideApplication ( const double  a_value )

inlinestatic

Set Larval insecticide mortality parameter.

{ m_Egg_InsecticideApplication = a_value; }

References m_Egg_InsecticideApplication.

Referenced by Beetle_Population_Manager::Beetle_Population_Manager().

SetEgg_SoilCultivationMortality()

static void Beetle_Egg_List::SetEgg_SoilCultivationMortality ( const double  a_value )

inlinestatic

Set egg soil mortality parameter.

{ m_Egg_SoilCultivationMortality = a_value; }

References m_Egg_SoilCultivationMortality.

Referenced by Beetle_Population_Manager::Beetle_Population_Manager().

SetEgg_StriglingMort()

static void Beetle_Egg_List::SetEgg_StriglingMort ( const double  a_value )

inlinestatic

Set mechanical weeding mortality parameter.

{ m_Egg_StriglingMort = a_value; }

References m_Egg_StriglingMort.

Referenced by Beetle_Population_Manager::Beetle_Population_Manager().

SetEggPppEffectProb()

static void Beetle_Egg_List::SetEggPppEffectProb ( const double  a_conc )

inlinestatic

Set body PPP effect probability

{ m_BeetleEPPPEffectProb = a_conc; }

References m_BeetleEPPPEffectProb.

Referenced by Beetle_Population_Manager::Beetle_Population_Manager().

SetEggPppEffectProbDecay()

static void Beetle_Egg_List::SetEggPppEffectProbDecay ( const double  a_decay )

inlinestatic

Set PPP effect decayy

{ m_BeetleEPPPEffectProbDecay = a_decay; }

References m_BeetleEPPPEffectProbDecay.

Referenced by Beetle_Population_Manager::Beetle_Population_Manager().

SetEggPppElimRate()

static void Beetle_Egg_List::SetEggPppElimRate ( const double  a_rate )

inlinestatic

Set body burden elimination rate for egg

{ m_BeetleEggPPPElimRate = a_rate; }

References m_BeetleEggPPPElimRate.

Referenced by Beetle_Population_Manager::Beetle_Population_Manager().

SetEggPppThreshold()

static void Beetle_Egg_List::SetEggPppThreshold ( const double  a_thresh )

inlinestatic

Set body PPP threshold

{ m_BeetleEPPPThreshold = a_thresh; }

References m_BeetleEPPPThreshold.

Referenced by Beetle_Population_Manager::Beetle_Population_Manager().

St_Develop()

TTypesOfBeetleState Beetle_Egg_List::St_Develop ( )

protectedvirtual

Egg_List state development.

                                                {
    if (m_OurPopulation->SupplyDayDegs(m_Lifestage, m_DayMade) > m_DevelopmentConstants[m_Lifestage]) // Hatch
    {
        return tobs_NextStage; // go to hatch
    }
    return tobs_Developing;
    // carry on developing
}

References m_DayMade, Beetle_Base::m_DevelopmentConstants, Beetle_Base::m_Lifestage, Beetle_Base::m_OurPopulation, Beetle_Population_Manager::SupplyDayDegs(), tobs_Developing, and tobs_NextStage.

Referenced by Step().

St_Hatch()

TTypesOfBeetleState Beetle_Egg_List::St_Hatch ( )

protectedvirtual

Egg_List state hatching.

                                              {
    #pragma omp parallel
    {
    for(auto point: m_EggList[omp_get_thread_num()])
    {
        int temp_guard_x_index = point.m_x / cfg_MapGuardCellSize.value();
        int temp_guard_y_index = point.m_y / cfg_MapGuardCellSize.value();
        m_OurPopulation->SetGuardMapElement(temp_guard_x_index, temp_guard_y_index);
        DecDensity(point.m_x, point.m_y);
        Struct_Beetle BS(point.m_x, point.m_y, m_OurLandscape, m_OurPopulation);
        m_OurPopulation->CreateObjects(bob_Larva1, this, nullptr, &BS, 1);
        m_OurPopulation->UnsetGuardMapElement(temp_guard_x_index, temp_guard_y_index);
    }
 
    m_EggList[omp_get_thread_num()].clear(); // empty the list
    }
 
    return tobs_Initiation;
#ifdef __LAMBDA_RECORD
    m_OurPopulation->LamdaBirth(m_Location_x,m_Location_y,size);
#endif
}

References bob_Larva1, cfg_MapGuardCellSize, Beetle_Population_Manager::CreateObjects(), Beetle_Base::DecDensity(), Population_Manager::LamdaBirth(), m_EggList, TAnimal::m_Location_x, TAnimal::m_Location_y, TAnimal::m_OurLandscape, Beetle_Base::m_OurPopulation, Population_Manager::SetGuardMapElement(), tobs_Initiation, Population_Manager::UnsetGuardMapElement(), and CfgInt::value().

Referenced by Step().

Step()

void Beetle_Egg_List::Step ( void  )

overridevirtual

Egg_List class Step code.

Implements Beetle_Base.

                           {
    if (m_CurrentStateNo == -1 || m_StepDone) return;
    switch (m_CurrentBState)
    {
    case tobs_Initiation: // Initial
        m_CurrentBState = tobs_Developing;
        break;
    case tobs_Developing: // Developing
        m_CurrentBState = St_Develop(); //   st_Develop() can return: tobs_Hatching tobs_Developing
        if (m_CurrentBState == tobs_Developing) m_StepDone = true;
        break;
    case tobs_NextStage:
        m_CurrentBState = St_Hatch(); //   st_Hatch() can return: tobs_Initiation
        break;
    case tobs_Emerging:
    case tobs_Foraging:
    case tobs_Aggregating:
    case tobs_Hibernating:
    case tobs_Dispersing:
    case tobs_BDying:
    case tobs_Destroy:
        m_OurLandscape->Warn("Beetle_Egg_List::Step()", "Beetle Egg - Unknown State");
        g_msg->Warn(WARN_BUG, "State attempted was: ", static_cast<int>(m_CurrentBState));
        exit(1);
    }
}

References g_msg, Beetle_Base::m_CurrentBState, TALMaSSObject::m_CurrentStateNo, TAnimal::m_OurLandscape, TALMaSSObject::m_StepDone, St_Develop(), St_Hatch(), tobs_Aggregating, tobs_BDying, tobs_Destroy, tobs_Developing, tobs_Dispersing, tobs_Emerging, tobs_Foraging, tobs_Hibernating, tobs_Initiation, tobs_NextStage, MapErrorMsg::Warn(), Landscape::Warn(), and WARN_BUG.

Supply_m_Location()

void Beetle_Egg_List::Supply_m_Location ( const int  i, int &  a_x, int &  a_y  ) const

inline

supplies the x-coordinate of a specific egg in the list

                                                                  {
        int max_thread_num = omp_get_max_threads();
        int number = 0;
        int thread_found = 0;
        for(int j = 0; j < max_thread_num; j++) {
            int temp_number = distance(m_EggList[j].begin(), m_EggList[j].end());
            number += temp_number;
            if(number >= i) {
                thread_found = j;
                number = i - (number - temp_number); 
                break;
            }
        }
        auto l_point = m_EggList[thread_found].begin();
        std::advance(l_point, number);
        a_x = (*l_point).m_x; 
        a_y = (*l_point).m_y;
    }

References m_EggList.

SupplyEggNumber()

int Beetle_Egg_List::SupplyEggNumber ( ) const

inline

/brief Returns the total egg population size for a day

                                {
        int max_thread_num = omp_get_max_threads();
        int number = 0;
        for(int i = 0; i < max_thread_num; i++) {
            number += distance(m_EggList[i].begin(), m_EggList[i].end());
        }
        return number;
    }

References m_EggList.

Member Data Documentation

m_BeetleEggPPPElimRate

double Beetle_Egg_List::m_BeetleEggPPPElimRate = 0

staticprotected

Set PPP elimination rate

Referenced by SetEggPppElimRate().

m_BeetleEPPPEffectProb

double Beetle_Egg_List::m_BeetleEPPPEffectProb = 0

staticprotected

Set body PPP effect probability

Referenced by InternalPesticideHandlingAndResponse(), and SetEggPppEffectProb().

m_BeetleEPPPEffectProbDecay

double Beetle_Egg_List::m_BeetleEPPPEffectProbDecay = 0

staticprotected

Set PPP decay

Referenced by InternalPesticideHandlingAndResponse(), and SetEggPppEffectProbDecay().

m_BeetleEPPPThreshold

double Beetle_Egg_List::m_BeetleEPPPThreshold = 0

staticprotected

Set body PPP effect threshold

Referenced by InternalPesticideHandlingAndResponse(), and SetEggPppThreshold().

m_DailyEggMort

double Beetle_Egg_List::m_DailyEggMort = 0.007

staticprotected

Daily fixed mortality probability.

Referenced by DailyMortality(), and SetDailyEggMort().

m_DayMade

int Beetle_Egg_List::m_DayMade

protected

Records the day hatched for development calculations.

Referenced by Beetle_Egg_List(), and St_Develop().

m_Egg_HarvestMort

double Beetle_Egg_List::m_Egg_HarvestMort = 0

staticprotected

The egg harvest mortality parameter.

Referenced by GetHarvestMortality(), and SetEgg_HarvestMort().

m_Egg_InsecticideApplication

double Beetle_Egg_List::m_Egg_InsecticideApplication = 0

staticprotected

The egg nsecticide mortality parameter.

Referenced by GetInsecticideApplication(), and SetEgg_InsecticideApplication().

m_Egg_SoilCultivationMortality

double Beetle_Egg_List::m_Egg_SoilCultivationMortality = 0

staticprotected

The egg soil mortality parameter.

Referenced by GetSoilCultivationMortality(), and SetEgg_SoilCultivationMortality().

m_Egg_StriglingMort

double Beetle_Egg_List::m_Egg_StriglingMort = 0

staticprotected

The egg strigling mortality parameter.

Referenced by GetStriglingMortality(), and SetEgg_StriglingMort().

m_EggList

TListOfEggs Beetle_Egg_List::m_EggList

protected

The list of eggs.

Referenced by AddEgg(), Beetle_Egg_List(), CannibalismMortality(), Clear(), DailyMortality(), ExtremeTempMortality(), St_Hatch(), Supply_m_Location(), and SupplyEggNumber().

---

The documentation for this class was generated from the following files:

• /builds/ALMaSS/ALMaSS_MIDox/Beetles/Beetle_BaseClasses.h
• /builds/ALMaSS/ALMaSS_MIDox/Beetles/Beetle_BaseClasses.cpp