AOR_Probe Class Reference

#include <AOR_Probe.h>

Inheritance diagram for AOR_Probe:

Public Member Functions
	AOR_Probe (Population_Manager *a_owner, Landscape *a_TheLandscape, string a_filename)
virtual	~AOR_Probe ()
virtual void	CloseFile ()
void	WriteData ()
void	WriteDataHL ()
virtual void	DoProbe (int a_lifestage)
virtual void	DoProbeInHaitatType (int a_lifestage, TTypesOfLandscapeElement a_tole)
	Records the locations of all beetles and classifies them as to in a habitat type or not. More...

Protected Attributes
ofstream	m_ProbeFile
ofstream	m_ProbeFileHL
int	m_gridcountwidth [4]
int	m_gridcountheight [4]
int	m_gridcountsize [4]
int	m_totalcells [4]
ListOfCells	m_gridcount [4]
ListOfCells	m_gridcountHLoc [4]
Landscape *	m_TheLandscape
TTypesOfLandscapeElement	m_target_tole
Population_Manager *	m_owner

Constructor & Destructor Documentation

AOR_Probe()

AOR_Probe::AOR_Probe	(	Population_Manager *	a_owner,
		Landscape *	a_TheLandscape,
		string	a_filename
	)

{
    // Relies on a standard cfg_ to determine whether the AOR Habitat Location Probe is needed.
    m_owner = a_owner;
    m_TheLandscape = a_Landscape;
    m_target_tole = tole_Foobar;
    if (a_filename == "") a_filename = "NWordOutputPrb.txt"; // this is for backwards compatability - this output used to be called NWord
    m_ProbeFile.open(a_filename, ios::out);
    if (!m_ProbeFile) {
        g_msg->Warn(WARN_FILE, "Population_Manager::AOR_Probe: ""Unable to open NWord probe file:", a_filename);
        exit(1);
    }
    m_ProbeFile << "Year" << '\t' << "Day" << '\t' << "Total_no" << '\t' << "Cells50" << '\t' << "Occupied50" << '\t' << "Cells100" << '\t' << "Occupied100" << '\t' << "Cells200" << '\t' << "Occupied200" << '\t' << "Cells400" << '\t' << "Occupied400" << endl;
    if (cfg_AOR_Habitat_Location_On.value())
    {
        m_target_tole = m_TheLandscape->TranslateEleTypes(cfg_AOR_Habitat_Location_Type.value());
        a_filename = std::regex_replace(a_filename, std::regex("\\.txt"), "_HabitatLocation.txt");
        m_ProbeFileHL.open(a_filename, ios::out);
        if (!m_ProbeFileHL) {
            g_msg->Warn(WARN_FILE, "Population_Manager::AOR_Probe: ""Unable to open NWord probe file:", a_filename);
            exit(1);
        }
        m_ProbeFileHL << "Habitat counted from is ALMaSS type " << cfg_AOR_Habitat_Location_Type.value() << endl;
        m_ProbeFileHL << "Year" << '\t' << "Day" << '\t' << "Total_no" << '\t' << "Cells50" << '\t' << "Occupied50" << '\t' << "Cells100" << '\t' << "Occupied100" << '\t' << "Cells200" << '\t' << "Occupied200" << '\t' << "Cells400" << '\t' << "Occupied400" << endl;
    }
    m_gridcountsize[0] = 50;
    m_gridcountsize[1] = 100;
    m_gridcountsize[2] = 200;
    m_gridcountsize[3] = 400;
    for (int g = 0; g < 4; g++) {
        m_gridcountwidth[g] =  m_TheLandscape->SupplySimAreaWidth() / m_gridcountsize[g];
        if (m_TheLandscape->SupplySimAreaWidth() % m_gridcountsize[g] > 0) m_gridcountwidth[g]++; // add one if there is a bit of a square left
        m_gridcountheight[g] = m_TheLandscape->SupplySimAreaHeight() / m_gridcountsize[g];
        if (m_TheLandscape->SupplySimAreaHeight() % m_gridcountsize[g] > 0) m_gridcountheight[g]++; // add one if there is a bit of a square left
        m_totalcells[g] = m_gridcountwidth[g] * m_gridcountheight[g];
        m_gridcount[g].resize(m_totalcells[g]);
        m_gridcountHLoc[g].resize(m_totalcells[g]);
    }
}

References cfg_AOR_Habitat_Location_On, cfg_AOR_Habitat_Location_Type, g_msg, tole_Foobar, CfgInt::value(), CfgBool::value(), MapErrorMsg::Warn(), and WARN_FILE.

~AOR_Probe()

virtual AOR_Probe::~AOR_Probe ( )

inlinevirtual

                         {
        CloseFile();
    }

References CloseFile().

Member Function Documentation

CloseFile()

virtual void AOR_Probe::CloseFile ( )

inlinevirtual

                             {
        m_ProbeFile.close();
    }

References m_ProbeFile.

Referenced by ~AOR_Probe().

DoProbe()

void AOR_Probe::DoProbe ( int  a_lifestage )

virtual

Counts all a_lifestage animals in each grid of each size

Reimplemented in AOR_Probe_Goose.

                                       {
    unsigned int total = (unsigned)m_owner->GetLiveArraySize(a_lifestage);
    // Empty old data
    for (int grid = 0; grid < 4; grid++) {
        for (int i = 0; i < m_totalcells[grid]; i++) m_gridcount[grid][i] = 0;
    }
    // For each animal get the location and place it in each of the (4) grids
    for (unsigned j = 0; j < total; j++)      //adult females
    {
        APoint pt = m_owner->SupplyAnimalPtr(a_lifestage, j)->SupplyPoint();
        for (int grid = 0; grid < 4; grid++) {
            int gx = pt.m_x / m_gridcountsize[grid];
            int gy = pt.m_y / m_gridcountsize[grid];
            m_gridcount[grid][gx + gy * m_gridcountwidth[grid]]++;
            if (cfg_AOR_Habitat_Location_On.value())
            {
                if (m_owner->SupplyAnimalPtr(a_lifestage, j)->SupplyPolygonType() == m_target_tole) m_gridcountHLoc[grid][gx + gy * m_gridcountwidth[grid]]++;
            }
 
        }
    }
    WriteData();
}

References cfg_AOR_Habitat_Location_On, APoint::m_x, APoint::m_y, and CfgBool::value().

Referenced by Erigone_Population_Manager::TheAOROutputProbe(), Oedothorax_Population_Manager::TheAOROutputProbe(), Vole_Population_Manager::TheAOROutputProbe(), Osmia_Population_Manager::TheAOROutputProbe(), Ladybird_Population_Manager::TheAOROutputProbe(), Skylark_Population_Manager::TheAOROutputProbe(), THare_Population_Manager::TheAOROutputProbe(), and Beetle_Population_Manager::TheAOROutputProbe().

DoProbeInHaitatType()

void AOR_Probe::DoProbeInHaitatType ( int  a_lifestage, TTypesOfLandscapeElement  a_tole  )

virtual

Records the locations of all beetles and classifies them as to in a habitat type or not.

Counts all a_lifestage animals in each grid of each size

{
    unsigned int total = (unsigned)m_owner->GetLiveArraySize(a_lifestage);
    // Empty old data
    for (int grid = 0; grid < 4; grid++) {
        for (int i = 0; i < m_totalcells[grid]; i++) m_gridcountHLoc[grid][i] = 0;
    }
    // For each animal get the location and place it in each of the (4) grids
    for (unsigned j = 0; j < total; j++)      
    {
        APoint pt = m_owner->SupplyAnimalPtr(a_lifestage, j)->SupplyPoint();
        for (int grid = 0; grid < 4; grid++) {
            int gx = pt.m_x / m_gridcountsize[grid];
            int gy = pt.m_y / m_gridcountsize[grid];
            m_gridcountHLoc[grid][gx + gy * m_gridcountwidth[grid]]++;
        }
    }
    WriteData();
}

References Population_Manager::GetLiveArraySize(), m_gridcountHLoc, m_gridcountsize, m_gridcountwidth, m_owner, m_totalcells, APoint::m_x, APoint::m_y, Population_Manager::SupplyAnimalPtr(), TAnimal::SupplyPoint(), and WriteData().

WriteData()

void AOR_Probe::WriteData

(

)

{
    int Counted[4];
    int OccupiedCells[4];
    for (int gsz = 0; gsz < 4; gsz++) {
        Counted[gsz] = 0;
        OccupiedCells[gsz] = 0;
        for (int i = 0; i < m_gridcountwidth[gsz]; i++) {
            for (int j = 0; j < m_gridcountheight[gsz]; j++) {
                int res = m_gridcount[gsz][i + j * m_gridcountwidth[gsz]];
                Counted[gsz] += res;
                if (res > 0) OccupiedCells[gsz]++;
            }
        }
    }
    m_ProbeFile << m_TheLandscape->SupplyYearNumber() << '\t' << (int)m_TheLandscape->SupplyDayInYear() << '\t' << Counted[0] << '\t';
    for (int c = 0; c < 3; c++) {
        m_ProbeFile << m_totalcells[c] << '\t' << OccupiedCells[c] << '\t';
    }
    m_ProbeFile << m_totalcells[3] << '\t' << OccupiedCells[3] << endl;
    if (cfg_AOR_Habitat_Location_On.value())
    {
        WriteDataHL();
    }
}

References cfg_AOR_Habitat_Location_On, and CfgBool::value().

Referenced by AOR_Probe_Goose::DoProbe(), and DoProbeInHaitatType().

WriteDataHL()

void AOR_Probe::WriteDataHL

(

)

{
    int Counted[4];
    int OccupiedCells[4];
    for (int gsz = 0; gsz < 4; gsz++) {
        Counted[gsz] = 0;
        OccupiedCells[gsz] = 0;
        for (int i = 0; i < m_gridcountwidth[gsz]; i++) {
            for (int j = 0; j < m_gridcountheight[gsz]; j++) {
                int res = m_gridcountHLoc[gsz][i + j * m_gridcountwidth[gsz]];
                Counted[gsz] += res;
                if (res > 0) OccupiedCells[gsz]++;
            }
        }
    }
    m_ProbeFileHL << m_TheLandscape->SupplyYearNumber() << '\t' << (int)m_TheLandscape->SupplyDayInYear() << '\t' << Counted[0] << '\t';
    for (int c = 0; c < 3; c++) {
        m_ProbeFileHL << m_totalcells[c] << '\t' << OccupiedCells[c] << '\t';
    }
    m_ProbeFileHL << m_totalcells[3] << '\t' << OccupiedCells[3] << endl;
}

Member Data Documentation

m_gridcount

ListOfCells AOR_Probe::m_gridcount[4]

protected

Referenced by AOR_Probe_Goose::DoProbe().

m_gridcountheight

int AOR_Probe::m_gridcountheight[4]

protected

m_gridcountHLoc

ListOfCells AOR_Probe::m_gridcountHLoc[4]

protected

Referenced by DoProbeInHaitatType().

m_gridcountsize

int AOR_Probe::m_gridcountsize[4]

protected

Referenced by AOR_Probe_Goose::DoProbe(), and DoProbeInHaitatType().

m_gridcountwidth

int AOR_Probe::m_gridcountwidth[4]

protected

Referenced by AOR_Probe_Goose::DoProbe(), and DoProbeInHaitatType().

m_owner

Population_Manager* AOR_Probe::m_owner

protected

Referenced by AOR_Probe_Goose::DoProbe(), and DoProbeInHaitatType().

m_ProbeFile

ofstream AOR_Probe::m_ProbeFile

protected

Referenced by CloseFile().

m_ProbeFileHL

ofstream AOR_Probe::m_ProbeFileHL

protected

m_target_tole

TTypesOfLandscapeElement AOR_Probe::m_target_tole

protected

m_TheLandscape

Landscape* AOR_Probe::m_TheLandscape

protected

m_totalcells

int AOR_Probe::m_totalcells[4]

protected

Referenced by DoProbeInHaitatType().

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The documentation for this class was generated from the following files:

• /builds/ALMaSS/ALMaSS_MIDox/BatchALMaSS/AOR_Probe.h
• /builds/ALMaSS/ALMaSS_MIDox/BatchALMaSS/AOR_Probe.cpp