AlleleFreq Class Reference

Class to handle statistics and constructs based on allele frequencies. More...

#include <GeneticMaterial.h>

Public Member Functions
	AlleleFreq ()
int	SupplyAN (int loc, int al)

Protected Attributes
int	AlleleNumber [32][16]
float	AlleleFrequency [32][16]
float	HE [32]
float	HO [32]
int	NoAlleles [32]

Detailed Description

Class to handle statistics and constructs based on allele frequencies.

Constructor & Destructor Documentation

AlleleFreq()

AlleleFreq::AlleleFreq

(

)

                        {
  FILE * FreqFile = fopen("GeneticFrequencies.txt", "r" );
  int data;
  if ( !FreqFile ) {
    g_msg->Warn( "GeneticFrequencies File missing", "" );
    exit( 0 );
  }
  for ( int i = 0; i < 16; i++ ) {
    for ( int j = 0; j < 4; j++ ) {
      fscanf( FreqFile, "%d", & data );
      AlleleNumber[ i ] [ j ] = data;
    }
  }
  for ( int i = 16; i < 32; i++ ) {
    for ( int j = 0; j < 16; j++ ) {
      fscanf( FreqFile, "%d", & data );
      AlleleNumber[ i ] [ j ] = data;
    }
  }
  fclose( FreqFile );
}

References AlleleNumber, g_msg, and MapErrorMsg::Warn().

Member Function Documentation

SupplyAN()

int AlleleFreq::SupplyAN ( int  loc, int  al  )

inline

{ return AlleleNumber[loc][al];}

References AlleleNumber.

Referenced by GeneticMaterial::Initiation().

Member Data Documentation

AlleleFrequency

float AlleleFreq::AlleleFrequency[32][16]

protected

AlleleNumber

int AlleleFreq::AlleleNumber[32][16]

protected

Referenced by AlleleFreq(), and SupplyAN().

HE

float AlleleFreq::HE[32]

protected

HO

float AlleleFreq::HO[32]

protected

NoAlleles

int AlleleFreq::NoAlleles[32]

protected

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The documentation for this class was generated from the following files:

• /builds/ALMaSS/ALMaSS_MIDox/Vole/GeneticMaterial.h
• /builds/ALMaSS/ALMaSS_MIDox/Vole/GeneticMaterial.cpp